Search results for "Tree"
showing 10 items of 1841 documents
Nereida ignava gen. nov., sp. nov., a novel aerobic marine alpha-proteobacterium that is closely related to uncultured Prionitis (alga) gall symbiont…
2005
A Gram-negative, slightly halophilic, non-pigmented, strictly aerobic, chemo-organotrophic bacterium was isolated from Mediterranean sea water off the Spanish coast near Valencia. This strain was poorly reactive, being unable to grow in most carbon sources analysed in minimal medium. However, good growth was observed when more complex media and longer incubation times were used. Phylogenetic analysis based on an almost complete 16S rRNA gene sequence placed strain 2SM4T within the Roseobacter group, in the vicinity of uncultured bacteria described as gall symbionts of several species of the red alga Prionitis. Sequence similarity values between strain 2SM4T and the closest neighbouring spec…
Study of polymorphisms in the promoter region of ovine β-lactoglobulin gene and phylogenetic analysis among the Valle del Belice breed and other shee…
2012
The aim of this work was to sequence the promoter region of b-lactoglobulin (BLG) gene in four sheep breeds, in order to identify polymorphisms, infer and analyze haplotypes, and phylogenetic relationship among the Valle del Belice breed and the other three breeds considered as ancestors. Sequencing analysis and alignment of the obtained sequences showed the presence of 36 single nucleotide polymorphisms (SNPs) and one deletion. A total of 22 haplotypes found in ‘‘best’’ reconstruction were inferred considering the 37 polymorphic sites identified. Haplotypes were used for the reconstruction of a phylogenetic tree using the Neighbor-Joining algorithm. The number of polymorphisms identified s…
The origin of Lecithodesmus (Digenea: Campulidae) based on ND3 gene comparison
2000
Species of Lecithodesmus (Campulidae) occur almost exclusively in baleen whales throughout a wide geographical distribution. Other campulids occur only in odontocetes and, secondarily, in pinnipeds and the sea otter. Therefore, the ancestor of Lecithodesmus might have either cospeciated with mysticetes during the early divergence of mysticete and odontocete cetaceans or originated later via host switching. We evaluate both possibilities based on a phylogenetic analysis. The ND3 mitochondrial gene sequence of a species of Lecithodesmus was included in a previous partial molecular phylogeny of the Campulidae. Fasciola hepatica and Dicrocoelium dendriticum were used as outgroups. Maximum parsi…
Phylogenetic relationships of the family Campulidae (Trematoda) based on 18S rRNA sequences
1998
Traditionally, the family Campulidae has been associated either with the family Fasciolidae, parasites of ruminants, or the Acanthocolpidae, parasites of fishes, based on morphological similarities. Since morphology does not seem to resolve clearly the problem of the relationships of campulids, we have used the sequences of the 18S rRNA gene of the campulids Zalophotrema hepaticum, Campula oblonga and Nasitrema globicephalae, the fasciolid Fasciola hepatica, the acanthocolpid Stephanostomum baccatum and the outgroup Schistosoma mansoni to infer a phylogeny. Maximum parsimony and neighbour-joining methods were applied. Both methods indicated that campulids are closer to acanthocolpids than f…
A molecular phylogeny of the genus Ichthyocotylurus (Digenea, Strigeidae).
2001
Three nucleotide data sets, two nuclear (ribosomal internal transcribed spacer regions 1 and 2, ITS1 and ITS2) and one mitochondrial (cytochrome c oxidase subunit 1, CO1), were analysed using distance matrix and maximum likelihood methods to determine the inter-relationships amongst the four species attributed to the genus Ichthyocotylurus Odening, 1969. Sequence data obtained from all gene loci investigated supported the position of Ichthyocotylurus variegatus as a species discrete from Ichthyocotylurus platycephalus. Phylogenetic analyses yielded congruent trees, with I. variegatus isolates comprising a common clade to which I. platycephalus constitutes a sister taxon. Ichthyocotylurus er…
Analysing disparity by applying combined morphological and molecular approaches to French and Japanese carabid beetles
2000
The expression of morphological disparity within a clade is related to its history and to the environmental parameters within which it develops. Recent developments in geometric morphometries allow quantitative estimation of morphological disparity, and facilitate comparisons with genetic data intended to provide phylogenetic information. Such comparisons were made between two sets of ground beetle species from regions that differ biogeographically and environmentally: 12 post-glacial reinvading species from NE France; and 15 Japanese species less likely to be affected by the Pleistocene glacial events. Genetic relationships were inferred from mitochondrial DNA (ND5 gene). Morphological div…
Selecting ribosomal protein genes for invertebrate phylogenetic inferences: how many genes to resolve the Mollusca?
2010
Summary 1. Multi-gene analyses are currently the gold standard in phylogenetics, despite limited taxon sampling. To facilitate broad taxon representation on an economically tolerable level, we optimize the gene selection for future PCR-based sampling strategies. 2. Highly expressed ribosomal proteins (RP) were sampled chiefly for molluscs, the second largest metazoan phylum with largely unknown internal relationships. Thirty-two new sequences for Lepidochitona cinerea (Polyplacophora) were integrated into a data-matrix of 79 RP genes, comprising 16 mollusc species (five classes). The resulting maximum likelihood tree was used to evaluate each single-gene tree according to its topological fi…
Phylogeny of Hyadinini (Diptera: Ephydridae) with an Emphasis on Structures of the Proboscis
2014
Abstract. The shape of adult mouthparts (proboscis) of all genera of Hyadinini (Diptera: Ephydridae) is provided, including variability of cibarium, lacinia and the number of pseudotracheae. Its usage in phylogenetic construction is documented. All ten genera are diagnosed, including the genus Lytogaster, which is formally restored from synonymy with Hyadina. The ventral receptacle of four genera (Garifuna, Parahyadina, Parydroptera and Pelinoides) and the male terminalia of Parahyadina are presented for the first time. Monophyly of the tribe is discussed and the relationships among genera of Hyadinini are proposed. Ten Hyadinini genera are grouped into four lineages 1) Pelina group with Pe…
Phylogeny and evolution of the Arctium-Cousinia complex (Compositae, Cardueae-Carduinae)
2009
The phylogeny and evolution of the Arctium-Cousinia complex, including Arctium, Cousinia as one of the largest genera of Asteraceae, Hypacanthium and Schmalhausenia, is investigated. This group of genera has its highest diversity in the Irano-Turanian region and the mountains of Central Asia. We generated ITS and rpS4-trnT-trnL sequences for altogether 138 species, including 129 (of ca. 600) species of Cousinia. As found in previous analyses, Cousinia is not monophyletic. Instead, Cousinia subgg. Cynaroides and Hypacanthodes with together ca. 30 species are more closely related to Arctium, Hypacanthium and Schmalhausenia (Arctioid clade) than to subg. Cousinia (Cousinioid clade). The Arctio…
Molecular Phylogeny of Eumetazoa: Genes in Sponges (Porifera) Give Evidence for Monophyly of Animals
1998
At present, the universal phylogenetic tree exhibits a tripartite division of the living world and includes Bacteria (“eubacterial”), Archaea (“archebacterial”), and Eucarya (“eukaryotic”) branches (Woese et al. 1991) with the Progenote as the common ancestor (Woese 1987). It is difficult to assess the timely appearance of the first living organism. Some first decipherable evidence of early life has apparently been identified in Swaziland (South Africa) and Pilbara Supergroup (Western Australia) sediments, and dates back 3550 to 3000 Ma (million years) ago; these are stromatolites (see Walter 1996), microfossils, and particulate organic matter (reviewed in Schopf 1994). Eucarya are roughly …