Search results for "Tree"

Precision Oliviculture: Research Topics, Challenges, and Opportunities—A Review

2022

Since the beginning of the 21st century, there has been an increase in the agricultural area devoted to olive growing and in the consumption of extra virgin olive oil (EVOO). The continuous change in cultivation techniques implemented poses new challenges to ensure environmental and economic sustainability. In this context, precision oliviculture (PO) is having an increasing scientific interest and impact on the sector. Its implementation depends on various technological developments: sensors for local and remote crop monitoring, global navigation satellite system (GNSS), equipment and machinery to perform site-specific management through variable rate application (VRA), implementation of g…

2020

Piping erosion is one form of water erosion that leads to significant changes in the landscape and environmental degradation. In the present study, we evaluated piping erosion modeling in the Zarandieh watershed of Markazi province in Iran based on random forest (RF), support vector machine (SVM), and Bayesian generalized linear models (Bayesian GLM) machine learning algorithms. For this goal, due to the importance of various geo-environmental and soil properties in the evolution and creation of piping erosion, 18 variables were considered for modeling the piping erosion susceptibility in the Zarandieh watershed. A total of 152 points of piping erosion were recognized in the study area that…

Graffiti, Street Art, Urban Art: Terminological Problems and Generic Properties

2013

In the last ten years, street art has become a very important factor in the international art scene. It has become a precious object to buy and preserve, and yet there is considerable confusion about the generic properties and definition of street art in academic research. As a rightful part of popular culture and urban culture, street art is not pure and independent. It intertwines with different art forms and urban subcultures and nurtures spin-off production. Therefore it is quite hard to trace its borders. Street art is not graffiti. They are different visual expressions and even though they might share the same space, artists and techniques, they still produce visually and conceptually…

Molecular epidemiology and forensic genetics: application to a hepatitis C virus transmission event at a hemodialysis unit.

2002

Molecular phylogenetic analyses are frequently used in epidemiologic testing, although only occasionally in forensics. Their acceptability is hampered by a lack of statistical confidence in the conclusions. However, maximum likelihood testing provides a sound statistical framework for the testing of phylogenetic hypotheses relevant for forensic analysis. We present the results of applying this method to a small hepatitis C outbreak produced in a hospital hemodialysis unit that involved 6 patients. Polymerase chain reaction products from a 472-nt fragment of the E1-E2 region, including the hypervariable region, HVR-1, of the hepatitis C virus genome were cloned, and an average of 10 clones/p…

Clonal population structure of the chestnut blight fungus in expanding ranges in southeastern Europe.

2008

Expanding populations are often less genetically diverse at their margins than at the centre of a species' range. Established, older populations of the chestnut blight fungus, Cryphonectria parasitica, are more variable for vegetative compatibility (vc) types than in expanding populations in southeastern Europe where C. parasitica has colonized relatively recently. To test whether vc types represent clones, we genotyped 373 isolates of C. parasitica from southern Italy, Romania, Bulgaria, Macedonia, Greece and Turkey using 11 sequence-characterized amplified region (SCAR) markers. Ten SCAR loci and six vegetative incompatibility (vic) loci were polymorphic in these samples. These population…

First steps to restructuring the problematic genus Lasiotocus Looss, 1907 (Digenea: Monorchiidae) with the proposal of four new genera

2020

Lasiotocus Looss, 1907 is the largest genus within the Monorchiidae Odhner, 1911, with 52 species currently considered valid. Species belonging to this genus exhibit wide morphological variation and it is likely that many of them belong in other genera; however, testing the validity of the group has been hampered by a lack of molecular sequence data, especially for the type-species. Here, we report the first DNA sequences for Lasiotocus mulli (Stossich, 1883) Odhner, 1911, the type-species of the genus, and only the sixth Lasiotocus species to be sequenced. Sequences were generated for three ribosomal DNA markers, the ITS2, 18S and 28S regions, and for one mitochondrial DNA marker, the cox1…

The ITS-2 of the nuclear rDNA as a molecular marker for populations, species, and phylogenetic relationships in Triatominae (Hemiptera: Reduviidae), …

2001

The nucleotide sequences of the rDNA second internal transcribed spacer (ITS-2) of 31 populations of 12 and 3 species of the two main Triatominae tribes Triatomini and Rhodniini, including the most important Chagas disease vectors, were obtained. Sequence comparisons and parsimony, distance, and maximum-likelihood analyses indicate that ITS-2 is a useful marker for resolving supraspecific, specific, subspecific, and even sometimes population-level relationships in Triatominae. Results were markedly different between species of Triatomini and Rhodniini, suggesting polyphyly. Phylogenetic trees support an old divergence between South American and North-Central American Triatomini and query th…

The colonization history of Olea europaea L. in Macaronesia based on internal transcribed spacer 1 (ITS-1) sequences, randomly amplified polymorphic …

2000

Phylogenetic relationships in the Olea europaea complex and the phylogeography of 24 populations of the Macaronesian olive (O. europaea ssp. cerasiformis) were assessed by using three molecular markers: nuclear ribosomal internal transcribed spacer 1 (ITS-1) sequences, randomly amplified polymorphic DNAs (RAPD), and intersimple sequence repeats (ISSR). Parsimony analysis of the ITS-1 sequences and Neighbour-joining (NJ) analyses of RAPD and ISSR banding variation revealed four major lineages in the O. europaea complex: (1) ssp. cuspidata; (2) ssp. cerasiformis from Madeira; (3) ssp. laperrinei; and (4) ssp. cerasiformis from the Canary Islands plus ssp. europaea. These results provide unequ…

Network dynamics of eukaryotic LTR retroelements beyond phylogenetic trees

2009

Abstract Background Sequencing projects have allowed diverse retroviruses and LTR retrotransposons from different eukaryotic organisms to be characterized. It is known that retroviruses and other retro-transcribing viruses evolve from LTR retrotransposons and that this whole system clusters into five families: Ty3/Gypsy, Retroviridae, Ty1/Copia, Bel/Pao and Caulimoviridae. Phylogenetic analyses usually show that these split into multiple distinct lineages but what is yet to be understood is how deep evolution occurred in this system. Results We combined phylogenetic and graph analyses to investigate the history of LTR retroelements both as a tree and as a network. We used 268 non-redundant …

Diversity Arrays Technology (DArT) for Pan-genomic Evolutionary Studies of Non-model Organisms

2007

BackgroundHigh-throughput tools for pan-genomic study, especially the DNA microarray platform, have sparked a remarkable increase in data production and enabled a shift in the scale at which biological investigation is possible. The use of microarrays to examine evolutionary relationships and processes, however, is predominantly restricted to model or near-model organisms.Methodology/principal findingsThis study explores the utility of Diversity Arrays Technology (DArT) in evolutionary studies of non-model organisms. DArT is a hybridization-based genotyping method that uses microarray technology to identify and type DNA polymorphism. Theoretically applicable to any organism (even one for wh…