Search results for "Vector"

showing 10 items of 2660 documents

Complex formation between the NS3 serine-type proteinase of the hepatitis C virus and NS4A and its importance for polyprotein maturation

1995

Processing of the hepatitis C virus polyprotein is mediated by host cell signalases and at least two virally encoded proteinases. Of these, the serine-type proteinase encompassing the amino-terminal one-third of NS3 is responsible for cleavage at the four sites carboxy terminal of NS3. The activity of this proteinase is modulated by NS4A, a 54-amino-acid polyprotein cleavage product essential for processing at the NS3/4A, NS4A/4B, and NS4B/5A sites and enhancing cleavage efficiency between NS5A and NS5B. Using the vaccinia virus-T7 hybrid system to express hepatitis C virus polypeptides in BHK-21 cells, we studied the role of NS4A in proteinase activation. We found that the NS3 proteinase a…

Protein ConformationRecombinant Fusion ProteinsvirusesGenetic VectorsMolecular Sequence DataImmunologyVaccinia virusHepacivirusProtein Sorting SignalsViral Nonstructural ProteinsBiologyKidneyTransfectionCleavage (embryo)MicrobiologyAntibodiesCell LineSerineEpitopesViral Proteinschemistry.chemical_compoundProtein structureProteinase 3CricetinaeVirologyAnimalsAmino Acid SequenceProtein PrecursorsNS5BPeptide sequenceNS3Sequence Homology Amino AcidSerine Endopeptidasesvirus diseasesbiochemical phenomena metabolism and nutritiondigestive system diseasesNS2-3 proteaseBiochemistrychemistryInsect ScienceProtein Processing Post-TranslationalAlgorithmsRNA HelicasesResearch ArticleJournal of Virology
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Production of biologically active recombinant avidin in baculovirus-infected insect cells

1997

Abstract An efficient lepidopteran insect cell system was established for the expression of a recombinant form of chicken egg-white avidin. The gene product was obtained in both secreted and intracellular forms, and biologically active recombinant avidin was isolated using affinity chromatography on an iminobiotin–agarose column. Similar to the known quaternary structure of the native egg-white protein, the purified recombinant protein was glycosylated and assembled mainly into tetramers. Like native avidin, the recombinant tetramer also exhibited a high level of thermostability, and was further stabilized upon binding biotin. The biotin-binding and structural properties of the recombinant …

Protein DenaturationGlycosylationProtein ConformationGenetic VectorsBiotinEnzyme-Linked Immunosorbent AssaySpodopteraChromatography Affinitylaw.inventionchemistry.chemical_compoundAffinity chromatographyBiotinTetramerlawAnimalsbiologySepharoseAvidinFusion proteinRecombinant ProteinsBiochemistrychemistryBiotinylationRecombinant DNAbiology.proteinProtein quaternary structureBaculoviridaeChickensBiotechnologyAvidinProtein Expression and Purification
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Sialotranscriptomics of the argasid tick ornithodoros moubata along the trophogonic cycle

2021

32 páginas, 8 tablas, 6 figuras

Proteomics0301 basic medicineSwinePhysiologyRC955-962Gene ExpressionDisease VectorsProteomicsBiochemistryTranscriptomeMedical Conditions0302 clinical medicineTicksArctic medicine. Tropical medicineGene expressionMedicine and Health SciencesHuman relapsing feverGeneticsbiologyEukaryotaGenomicsProteasesBody FluidsEnzymesBloodInfectious DiseasesFemaleMetabolic PathwaysAnatomyPublic aspects of medicineRA1-1270Transcriptome analysisVitellogeninsMetabolic Networks and PathwaysResearch ArticleIxodidaeArthropoda030231 tropical medicineTickSalivary glandsArthropod Proteins03 medical and health sciencesExocrine GlandsOrnithodoros moubataArachnidaGeneticsAnimalsXenobiotic MetabolismTick ControlOrnithodorosSalivaIllumina dye sequencingIxodesAsfarviridaeImmunityOrganismsPublic Health Environmental and Occupational HealthBiology and Life SciencesComputational BiologyProteinsGenome Analysisbiology.organism_classificationInvertebratesOrnithodoros moubataPhospholipases A2Species InteractionsMetabolism030104 developmental biologyAfricaEnzymologyMetalloproteasesAfrican swine feverTranscriptomeDigestive SystemZoology
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Insights in ChAdOx1 nCoV-19 vaccine-induced immune thrombotic thrombocytopenia

2021

Abstract SARS-CoV-2 vaccine ChAdOx1 nCoV-19 (AstraZeneca) causes a thromboembolic complication termed vaccine-induced immune thrombotic thrombocytopenia (VITT). Using biophysical techniques, mouse models, and analysis of VITT patient samples, we identified determinants of this vaccine-induced adverse reaction. Super-resolution microscopy visualized vaccine components forming antigenic complexes with platelet factor 4 (PF4) on platelet surfaces to which anti-PF4 antibodies obtained from VITT patients bound. PF4/vaccine complex formation was charge-driven and increased by addition of DNA. Proteomics identified substantial amounts of virus production-derived T-REx HEK293 proteins in the ethyle…

ProteomicsAntigen-Antibody ComplexPlatelet Factor 4Extracellular TrapsBiochemistryEpitopesMiceSinus Thrombosis IntracranialMedicinePlateletCell Line TransformedMicroscopybiologyHematologymedicine.anatomical_structureSpike Glycoprotein CoronavirusAntibodyDrug ContaminationVirus CultivationGenetic VectorsImmunologyAdenoviridaeProinflammatory cytokineImaging Three-DimensionalImmune systemAntigenChAdOx1 nCoV-19AnimalsHumansPlatelet activationB cellAutoantibodiesInflammationPurpura Thrombocytopenic IdiopathicSARS-CoV-2business.industryCOVID-19Cell BiologyPlatelet ActivationPlatelets and ThrombopoiesisDynamic Light ScatteringHEK293 CellsImmunoglobulin GImmunologybiology.proteinCapsid ProteinsbusinessCapillary Leak SyndromePlatelet factor 4Extravasation of Diagnostic and Therapeutic MaterialsBlood
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Missing value imputation in proximity extension assay-based targeted proteomics data

2020

Targeted proteomics utilizing antibody-based proximity extension assays provides sensitive and highly specific quantifications of plasma protein levels. Multivariate analysis of this data is hampered by frequent missing values (random or left censored), calling for imputation approaches. While appropriate missing-value imputation methods exist, benchmarks of their performance in targeted proteomics data are lacking. Here, we assessed the performance of two methods for imputation of values missing completely at random, the previously top-benchmarked ‘missForest’ and the recently published ‘GSimp’ method. Evaluation was accomplished by comparing imputed with remeasured relative concentrations…

ProteomicsMaleMultivariate analysisProtein ExpressionBiochemistryProtein expressionDatabase and Informatics MethodsLimit of DetectionStatisticsMedicine and Health SciencesBiochemical SimulationsImputation (statistics)Immune ResponseMathematicsMultidisciplinaryProteomic DatabasesQREukaryotaBlood ProteinsVenous ThromboembolismPlantsMiddle AgedLegumesTargeted proteomicssymbolsEngineering and TechnologyMedicineFemaleAlgorithmsResearch ArticleQuality ControlAdultScienceImmunologyResearch and Analysis Methodssymbols.namesakeSigns and SymptomsBiasIndustrial EngineeringProtein Concentration AssaysGene Expression and Vector TechniquesMissing value imputationHumansMolecular Biology TechniquesMolecular BiologyAgedInflammationMolecular Biology Assays and Analysis TechniquesInterleukin-6OrganismsPeasBiology and Life SciencesComputational BiologyMissing dataPearson product-moment correlation coefficientBiological DatabasesMultivariate AnalysisClinical MedicineVenous thromboembolismPLOS ONE
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A Dynamic Distributed Algorithm for Multicast Path Setup

2005

In the past few years, there has been a considerable work on multicast route selection techniques, with the aim to design scalable protocols which can guarantee an efficient use of network resources. Steiner tree-based multicast algorithms produce optimal trees, but they are prohibitively expensive. For this reason, heuristic methods are generally employed. Conventional centralized Steiner heuristics provide effective solutions, but they are unpractical for large networks, since they require a complete knowledge of the network topology. In this paper, we propose a new distributed approach that is efficient and suitable for real network adoption. Performance evaluation indicates that it outp…

Protocol Independent MulticastMulticastComputer scienceDistributed computingDistance Vector Multicast Routing ProtocolNetwork topologySteiner tree problemsymbols.namesakeSource-specific multicastDistributed algorithmReliable multicastConvergence (routing)symbolsMulticast transmission Steiner Tree Routing protocolXcastCommunication complexityPragmatic General Multicast
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An efficient distributed approach for dynamic multicast trees

2005

In this paper we present a distributed algorithm for constructing efficient multicast trees in large networks. The algorithm allows the set up of effective distribution trees using a coordination protocol among the network nodes. The algorithm has been implemented and extensively tested both in simulation, and on experimental networks. Performance evaluation indicates that our approach outperforms the state-of-the-art distributed algorithms for multicast tree setup, providing good levels of convergence time and communication complexity. Furthermore, we introduce a distributed technique for dynamically updating the multicast tree. The approach monitors the accumulated damage as nodes join or…

Protocol Independent MulticastMulticastInter-domainComputer sciencebusiness.industryDistributed computingDistance Vector Multicast Routing ProtocolMultk.ast transmissions Dynamic SteinerSource-specific multicastDistributed algorithmXcastbusinessPragmatic General MulticastComputer networkITRE 2005. 3rd International Conference on Information Technology: Research and Education, 2005.
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"Table 1" of "Observation of electroweak production of a same-sign $W$ boson pair in association with two jets in $pp$ collisions at $\sqrt{s}=13$ Te…

2019

Measured fiducial cross section.

Proton-Proton ScatteringIntegrated Cross SectionW pair ProductionP P --> W- W- JET JETVBSCross SectionSIGP P --> W+ W+ JET JET13000Vector Boson Scattering
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"Table 5" of "Observation of electroweak production of a same-sign $W$ boson pair in association with two jets in $pp$ collisions at $\sqrt{s}=13$ Te…

2019

Efficiency correction factor $C_{WW}$, defined as the ratio of the number of reconstructed $W^{\pm}W^{\pm}jj$ electroweak events in the signal region over the number of events generated in the fiducial phase space, in bins of the dijet invariant mass, $m_{jj}$. The numbers are shown with their statistical and systematic uncertainties added in quadrature. The $C_{WW}$ factors have been calculated with Sherpa v2.2.2. The last bin includes the overflow.

Proton-Proton ScatteringW pair ProductionP P --> W- W- JET JETVBSP P --> W+ W+ JET JET13000Vector Boson Scattering
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"Table 6" of "Observation of electroweak production of a same-sign $W$ boson pair in association with two jets in $pp$ collisions at $\sqrt{s}=13$ Te…

2019

Efficiency correction factor $C_{WW}$, defined as the ratio of the number of reconstructed $W^{\pm}W^{\pm}jj$ electroweak events in the signal region over the number of events generated in the fiducial phase space, in bins of the dilepton invariant mass, $m_{ll}$. The numbers are shown with their statistical and systematic uncertainties added in quadrature. The $C_{WW}$ factors have been calculated with Sherpa v2.2.2. The last bin includes the overflow.

Proton-Proton ScatteringW pair ProductionP P --> W- W- JET JETVBSP P --> W+ W+ JET JET13000Vector Boson Scattering
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