Search results for "Workflow"

ballaxy: web services for structural bioinformatics.

2014

Abstract Motivation: Web-based workflow systems have gained considerable momentum in sequence-oriented bioinformatics. In structural bioinformatics, however, such systems are still relatively rare; while commercial stand-alone workflow applications are common in the pharmaceutical industry, academic researchers often still rely on command-line scripting to glue individual tools together. Results: In this work, we address the problem of building a web-based system for workflows in structural bioinformatics. For the underlying molecular modelling engine, we opted for the BALL framework because of its extensive and well-tested functionality in the field of structural bioinformatics. The large …

Talking Blockchains: The Perspective of a Database Researcher

2021

There are few topics out there, that seem to create as much confusion and discussion as blockchains. This has a multitude of reasons: (1) A large number of drastically different concepts and systems are unified under the very broad term "blockchain". (2) The topic touches a variety of different fields, including databases, distributed processing, networks, cryptography, and even economics. (3) There exists a large number of different applications of the technology.The goal of this paper is to simplify and structure the discussion of blockchain technology. We first introduce a simple formalization of the basic components, that appear again and again in a variety of blockchain systems. Second…

Conceptual evaluation of methods for engineering situational ISD methods

2006

In the past decades a large variety of techniques and methods have been introduced for software engineering (SE) and information system development (ISD). Despite this plurality, there is a need in organizations and projects to customize methods that match with their specific needs. Method engineering (ME) is the process by which a situational method is developed, customized and configured. ME work has appeared to be difficult and burdensome to carry out in practice. One reason for this is a lack of adequate methodical support. In this article, we profile and evaluate conceptually, using a contextual framework as a basis, seven comprehensive ME artifacts (i.e. techniques, procedures and met…

INVESTIGATION OF THE UNDERGROUND BUILDING HERITAGE AND THE MECHANISM OF WATER FLOWING IN QANĀTS IN PALERMO THROUGH INNOVATIVE SURVEYING TECHNIQUES

2021

Abstract. The valorisation, protection and preservation policies for the underground building heritage are often difficult to implement due to an inadequate knowledge of hypogeal constructions. The complex and widespread underground structures of the vast “Cavo” Heritage (“horizontal wells”, “shelf wells” or “well tunnels”), so called qanāts, hidden underground and built over the centuries in Palermo, representing an evocative testimony to the history of water culture in the ancient city. Through the historical and constructive analyses and the implementation and development of measurement and 3D representation and visualization, first actions have been carried out. The paper will present t…

Teleradiologie nach Röntgenverordnung - beispielhafte Anwendung der Open-Source-Software SecTelMed

2005

Purpose: Establishing a teleradiology connection according to the Rontgenverordnung (RoV) between a peripheral hospital and a university clinic will contribute to improve the radiological emergency treatment on weekends, holidays and at night. It will also better the medical care for patients and help to lower the costs. Materials and Methods: By using the open source software SecTelMed, the radiological picture is transferred via an internet-linked SSH communication server. The integration of the teleradiological data transfer into the actual workflow is attained by using the already existing PACS infrastructure. While its installation is still under construction, it is actually employed f…

ENFORCEMENT OF INTER-TASK DEPENDENCIES IN WORKFLOWS, CHARACTERIZATION AND PARADIGM

1998

Workflow techniques have gained a lot of attention as a means to support advanced business applications such as cooperative information systems and process re-engineering but also as a means to integrate legacy systems. Inter-task dependencies, described separately from the other parts of the workflow, have been recognized as a valuable method in describing certain restrictions on the executions of workflows. In this paper, we study the issue of pre-analysing and enforcing inter-task dependencies. The protocol and the theory behind it are presented, along with examples and discussions on ways to improve the performance. The idea is to present the meaning of a dependency through an automato…

An ontological-based knowledge organization for bioinformatics workflow management system

2012

Motivation and Objectives In the field of Computer Science, ontologies represent formal structures to define and organize knowledge of a specific application domain (Chandrasekaran et al., 1999). An ontology is composed of entities, called classes, and relationships among them. Classes are characterized by features, called attributes, and they can be arranged into a hierarchical organization. Ontologies are a fundamental instrument in Artificial Intelligence for the development of Knowledge-Based Systems (KBS). With its formal and well defined structure, in fact, an ontology provides a machine-understandable language that allows automatic reasoning for problems resolution. Typical KBS are E…

Definition of a Workflow for Web Browsing of 3D Models in Archaeology

2016

The Cultural Heritage (CH) is a fundamental element of promotion of territories and of tourism development. Publishing 3D models of archaeological sites and their three-dimensional reconstruction on the Web is one of the best ways to spread their knowledge. However, many recent scientific researches in this field have highlighted the limitations and difficulties related to the networking of interactive 3D models. The main difficulties are related to the complexity and the size of models, which influence the access speed, and the cost of software and hardware needed for the publication on the WEB. In light of this background, this article describes the further advances of research activities…

Understanding the role of documents in a hierarchical flow of work

1997

HOW TO MAKE A PIE: REPRODUCIBLE RESEARCH FOR EMPIRICAL ECONOMICS AND ECONOMETRICS

2020

Les recherches empiriques en sciences humaines et sociales necessitent la manipulation de nombreux fichiers : differents jeux de donnees, de multiples programmes, qu'ils soient destines a la manipulation de donnees, aux traitements statistiques, aux estimations econometriques ou a des simulations, et de nombreux fichiers successifs de resultats. Maitriser l’ensemble des etapes du projet de recherche est indispensable si l’on souhaite pouvoir reproduire ou repliquer les resultats a long terme. Cette rigueur (fiabilite, tracabilite, reproductibilite), est desormais de plus en plus exigee par notre profession ainsi que par les editeurs de revues scientifiques. Apres avoir mis en evidence les e…