Search results for "adenosine"

showing 10 items of 542 documents

The ras-related small GTP-binding protein RhoB is immediate-early inducible by DNA damaging treatments.

1995

The low molecular weight GTP-binding proteins RhoA, RhoB, and RhoC are characterized as specific substrates for the ADP-ribosyltransferase C3 from Clostridium botulinum and are supposed to be involved in the organization of the microfilamental network and transformation. rhoB is known to be immediate-early inducible by growth factors and protein-tyrosine kinases. Since increasing evidence indicates overlapping of growth factor- and UV-induced signal pathways, we studied the effect of UV light and other genotoxic agents on early rhoB transcription. Within 30 min after UV irradiation of NIH3T3 cells, the amount of rhoB mRNA increased 3-4-fold. Elevated rhoB mRNA was accompanied by an increase…

RHOAUltraviolet RaysRHOBRetinoic acidCycloheximideBiologyBiochemistrychemistry.chemical_compoundMiceGTP-Binding ProteinsRhoB GTP-Binding ProteinAnimalsRNA MessengerProtein kinase ArhoB GTP-Binding ProteinMolecular BiologyGenes Immediate-EarlyAdenosine Diphosphate RiboseKinaseMembrane ProteinsCell Biology3T3 CellsDNAMolecular biologychemistryGene Expression Regulationbiology.proteinDactinomycinTetradecanoylphorbol AcetateSignal transductionDNA DamageThe Journal of biological chemistry
researchProduct

An epigenetic ‘extreme makeover’: the methylation of flaviviral RNA (and beyond)

2020

Beyond their high clinical relevance worldwide, flaviviruses (comprising dengue and Zika viruses) are of particular interest to understand the spatiotemporal control of RNA metabolism. Indeed, their positive single-stranded viral RNA genome (vRNA) undergoes in the cytoplasm replication, translation and encapsidation, three steps of the flavivirus life cycle that are coordinated through a fine-tuned equilibrium. Over the last years, RNA methylation has emerged as a powerful mechanism to regulate messenger RNA metabolism at the posttranscriptional level. Not surprisingly, flaviviruses exploit RNA epigenetic strategies to control crucial steps of their replication cycle as well as to evade sen…

RNA methylationvirusesGenome ViralReviewDengue virusVirus Replicationmedicine.disease_causeMethylationEpigenesis GeneticDengue feverZika virus03 medical and health scienceschemistry.chemical_compound0302 clinical medicinemedicineAnimalsHumansEpigeneticsMolecular Biology030304 developmental biologyGenetics0303 health sciencesbiologyZika Virus InfectionFlavivirusRNAZika VirusCell Biologybiochemical phenomena metabolism and nutritionmedicine.diseasebiology.organism_classificationFlaviviruschemistry030220 oncology & carcinogenesisRNA ViralN6-MethyladenosineRNA Biology
researchProduct

Arabinose nucleoside triphosphates are no inhibitors for DNA-dependent RNA polymerases.

1976

1-Beta-D-arabinofuranosylcytosine-5' -triphosphate and 9-beta-D-arabinofuranosyladenosine-5' -triphosphate were found to have no inhibitory potency for both mammalian DNA-dependent RNA polymerase II and E. coli DNA-dependent RNA polymerase.

RNA-dependent RNA polymeraseRNA polymerase IIOviductsCytosine NucleotidesQuailCellular and Molecular Neurosciencechemistry.chemical_compoundAdenosine TriphosphateTranscription (biology)RNA polymeraseRNA polymerase IEscherichia coliAnimalsMolecular BiologyPolymerasePharmacologybiologyChemistryMusclesCytarabineRNACell BiologyDNA-Directed RNA PolymerasesMolecular biologyKineticsAvian Sarcoma VirusesRNA editingbiology.proteinMolecular MedicineRNA Polymerase IIVidarabineExperientia
researchProduct

Structural dynamics in F1ATPase during the first reaction cycle of ATP hydrolysis

1991

Abstract The velocity of ATP hydrolysis, catalyzed by purified F 1 ATPase from Micrococcus luteus , was decelerated on decreasing the temperature. At 13′C one reaction cycle is completed after 20 s. Hydrolysis was triggered upon rapid mixing of the enzyme with ATP. During the first reaction cycle, succeeding structural alterations of the F 1 ATPase were traced by time resolved X-ray scattering. The scattering spectra obtained from consecutive intervals of 1 s, revealed the F 1 ATPase to pass a conformational state exhibiting an expanded (6%) molecular shape. The expanded state was observed between 45% and 65% of the time required to complete the reaction cycle. This pointx out a conformatio…

Reaction mechanismProtein ConformationStereochemistryATPaseBiophysicsTime resolved X-ray scatteringBiochemistryMicrococcusCatalysisF1ATPaseHydrolysisMolecular dynamicsAdenosine TriphosphateStructural BiologyATP hydrolysisGeneticsMolecular Biologychemistry.chemical_classificationbiologyHydrolysisX-RaysReaction cycleCell Biologybiology.organism_classificationKineticsProton-Translocating ATPasesEnzymechemistryDynamic structure transitionbiology.proteinMicrococcus luteusFEBS Letters
researchProduct

A short-range gradient of histone H3 acetylation and Tup1p redistribution at the promoter of the Saccharomyces cerevisiae SUC2 gene.

2003

Chromatin immunoprecipitation assays are used to map H3 and H4 acetylation over the promoter nucleosomes and the coding region of the Saccharomyces cerevisiae SUC2 gene, under repressed and derepressed conditions, using wild type and mutant strains. In wild type cells, a high level of H3 acetylation at the distal end of the promoter drops sharply toward the proximal nucleosome that covers the TATA box, a gradient that become even steeper on derepression. In contrast, substantial H4 acetylation shows no such gradient and extends into the coding region. Overall levels of both H3 and H4 acetylation rise on derepression. Mutation of GCN5 or SNF2 lead to substantially reduced SUC2 expression; in…

Saccharomyces cerevisiae ProteinsTATA boxMutantGene ExpressionSaccharomyces cerevisiaeBiologyBiochemistryPolymerase Chain ReactionHistonesNucleosomeRNA MessengerHistone H3 acetylationDNA FungalPromoter Regions GeneticMolecular BiologyDerepressionHistone AcetyltransferasesAdenosine Triphosphatasesbeta-FructofuranosidaseWild typeChromosome MappingNuclear ProteinsCell BiologyMolecular biologyDNA-Binding ProteinsRepressor ProteinsAcetylationMutagenesisChromatin immunoprecipitationProtein KinasesTranscription FactorsThe Journal of biological chemistry
researchProduct

Specific Defects in Different Transcription Complexes Compensate for the Requirement of the Negative Cofactor 2 Repressor in Saccharomyces cerevisiae

2007

Abstract Negative cofactor 2 (NC2) has been described as an essential and evolutionarily conserved transcriptional repressor, although in vitro and in vivo experiments suggest that it can function as both a positive and a negative effector of transcription. NC2 operates by interacting with the core promoter and components of the basal transcription machinery, like the TATA-binding protein (TBP). In this work, we have isolated mutants that suppress the growth defect caused by the depletion of NC2. We have identified mutations affecting components of three different complexes involved in the control of basal transcription: the mediator, TFIIH, and RNA pol II itself. Mutations in RNA pol II in…

Saccharomyces cerevisiae ProteinsTranscription GeneticRepressorRNA polymerase IISaccharomyces cerevisiaeInvestigationsGeneticsPromoter Regions GeneticTranscription factorAllelesGeneticsAdenosine TriphosphatasesTATA-Binding Protein Associated FactorsbiologyGeneral transcription factorDNA HelicasesPromoterPhosphoproteinsRepressor ProteinsProtein SubunitsTranscription Factor TFIIHMutationTranscription factor II Hbiology.proteinTrans-ActivatorsTranscription Factor TFIIBMutant ProteinsTranscription Factor TFIIDRNA Polymerase IITranscription factor II BTranscription Factor TFIIHTranscription Factors
researchProduct

Partial purification and characterization of succinyl-CoA synthetase from Saccharomyces cerevisiae

1983

Succinyl-CoA synthetase from Saccharomyces cerevisiae was partially purified (20-fold) with a yield of 44%. The Michaelis-Menten constants were determined: Km (succinate) = 17 mM; Km (ATP) = 0.13 mM; Km (CoA) = 0.03 mM. The succinyl-CoA synthetase has a molecular weight of about 80000 dalton (as determined by polyacrylamide gradient gel electrophoresis). The pH optimum is at 6.0. During fermentation the activity of succinyl-CoA synthetase is lower than in aerobically grown yeast cells. The presence of succinyl-CoA synthetase in fermenting yeasts may be regarded as an indication for the oxidative formation of succinate. In fermenting yeast cells succinyl-CoA synthetase is repressed by glucos…

Saccharomyces cerevisiaeSuccinic AcidCatabolite repressionSaccharomyces cerevisiaeMicrobiologyAdenosine TriphosphateCoenzyme A LigasesSuccinate-CoA LigasesAnaerobiosisMolecular BiologyGel electrophoresischemistry.chemical_classificationChromatographybiologyorganic chemicalsSuccinyl coenzyme A synthetaseTemperatureSuccinatesSuccinate-CoA LigasesGeneral MedicineHydrogen-Ion Concentrationbiology.organism_classificationYeastAmino acidMolecular WeightKineticsBiochemistrychemistrybacteriaFermentationAntonie van Leeuwenhoek
researchProduct

Chiral Inversion of 1-Hydroxyethylpyrene Enantiomers Mediated by Enantioselective Sulfotransferases

1998

The benzylic alcohol 1-hydroxyethylpyrene (1-HEP) is activated to a mutagen by sulfotransferases. The sulfuric acid ester formed is difficult to detect, as it is rapidly hydrolysed back to the alcohol. Incubation of the individual enantiomers of 1-HEP with human hydroxysteroid sulfotransferase (hHST) or estrogen sulfotransferase (hEST), expressed in bacteria, led to the formation of the other enantiomer. The rates of sulfation were determined from the initial rates of chiral inversion of the alcohol, knowing that hydrolysis follows an SN1 mechanism and therefore produces racemic alcohol. hEST showed high enantioselectivity for S-1-HEP, whereas hHST strongly preferred the R-enantiomer. The r…

Salmonella typhimuriumSulfotransferaseStereochemistryChemistryPhosphoadenosine PhosphosulfateBiophysicsEnantioselective synthesisStereoisomerismStereoisomerismAlcoholCell BiologySulfuric Acid EstersBiochemistrychemistry.chemical_compoundSulfationHumansEstrogen SulfotransferaseHydroxysteroidSulfotransferasesEnantiomerMolecular BiologyBenzyl AlcoholsBiochemical and Biophysical Research Communications
researchProduct

Novel Glutamate–Putrescine Ligase Activity in Haloferax mediterranei: A New Function for glnA-2 Gene

2021

This article belongs to the Section Cellular Biochemistry.

Salmonella typhimuriumTranscription GeneticNitrogen assimilationHaloferax mediterraneiGene ExpressionBiochemistryGlutamate-putrescine ligase activitySubstrate SpecificityLigasesAdenosine TriphosphateputrescineCloning MolecularPhylogenyhaloarchaeachemistry.chemical_classification0303 health sciencesbiologyChemistryHaloarchaeaEscherichia coli Proteinsglutamine synthetaseBioquímica y Biología MolecularQR1-502Recombinant ProteinsNitrogen assimilationHaloferax mediterraneiIsoenzymesBiochemistryArchaeal ProteinsGenetic VectorsGlutamic AcidGlutamate–putrescine ligaseMicrobiologyArticleglutamate–putrescine ligaseGlutamine synthetase03 medical and health sciencesAmmoniaGlutamine synthetaseNitrogen FixationEscherichia coliPutrescineAmino Acid SequenceMolecular Biology030304 developmental biologyDNA ligaseSequence Homology Amino Acid030306 microbiologyComputational Biologynitrogen assimilationbiology.organism_classificationMetabolic pathwayEnzymeProtein BiosynthesisHaloarchaeaGene Expression Regulation ArchaealSequence AlignmentBiomolecules
researchProduct

Depletion of cytosolic GSH decreases the ATP levels and viability of synaptosomes from aged mice but not from young mice

1995

The effect of glutathione depletion on the viability of freshly isolated synaptosomes from whole brain was investigated in young and aged mice. Aging did not influence the GSH and ATP levels and the viability of these synaptosomes. However depletion of glutathione caused by the cytosolic glutathione inhibitor diethyl maleate (1 mM) resulted in a significant decline, after 60 min of incubation, in ATP levels and viability in the synaptosomes from aged mice but not in those from young mice. When synaptosomes were incubated in the presence of the mitochondrial glutathione inhibitor ethacrynic acid (0.2 mM) there was a similar decline in glutathione, ATP levels and synaptosomal viability, both …

SenescenceAgingmedicine.medical_specialtyRatónBiologyMitochondrionMiceRandom Allocationchemistry.chemical_compoundAdenosine TriphosphateCytosolInternal medicinemedicineAnimalsIncubationSynaptosomeGlutathioneGlutathioneIn vitroMitochondriaCytosolEthacrynic AcidEndocrinologychemistryFemaleEnergy MetabolismSynaptosomesDevelopmental BiologyMechanisms of Ageing and Development
researchProduct