Search results for "algorithm"

showing 10 items of 4887 documents

Topology Inference and Signal Representation Using Dictionary Learning

2019

This paper presents a Joint Graph Learning and Signal Representation algorithm, called JGLSR, for simultaneous topology learning and graph signal representation via a learned over-complete dictionary. The proposed algorithm alternates between three main steps: sparse coding, dictionary learning, and graph topology inference. We introduce the “transformed graph” which can be considered as a projected graph in the transform domain spanned by the dictionary atoms. Simulation results via synthetic and real data show that the proposed approach has a higher performance when compared to the well-known algorithms for joint undirected graph topology inference and signal representation, when there is…

Computer science0202 electrical engineering electronic engineering information engineeringInferenceGraph (abstract data type)Topological graph theory020206 networking & telecommunications020201 artificial intelligence & image processingTopology inference02 engineering and technologyNeural codingAlgorithmDictionary learningGraph2019 27th European Signal Processing Conference (EUSIPCO)
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SCCF Parameter and Similarity Measure Optimization and Evaluation

2019

Neighborhood-based Collaborative Filtering (CF) is one of the most successful and widely used recommendation approaches; however, it suffers from major flaws especially under sparse environments. Traditional similarity measures used by neighborhood-based CF to find similar users or items are not suitable in sparse datasets. Sparse Subspace Clustering and common liking rate in CF (SCCF), a recently published research, proposed a tunable similarity measure oriented towards sparse datasets; however, its performance can be maximized and requires further analysis and investigation. In this paper, we propose and evaluate the performance of a new tuning mechanism, using the Mean Absolute Error (MA…

Computer science020206 networking & telecommunications02 engineering and technologyRecommender systemSimilarity measurecomputer.software_genreMeasure (mathematics)Similarity (network science)Subspace clustering0202 electrical engineering electronic engineering information engineeringCollaborative filtering020201 artificial intelligence & image processingData miningcomputerSelection (genetic algorithm)Overall efficiency
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Automatic estimation of Purkinje-Myocardial junction hot-spots from noisy endocardial samples: A simulation study

2017

The reconstruction of the ventricular cardiac conduction system (CCS) from patient-specific data is a challenging problem. High-resolution imaging techniques have allowed only the segmentation of proximal sections of the CCS from images acquired ex vivo. In this paper, we present an algorithm to estimate the location of a set of Purkinje-myocardial junctions (PMJs) from electro-anatomical maps, as those acquired during radio-frequency ablation procedures. The method requires a mesh representing the myocardium with local activation time measurements on a subset of nodes. We calculate the backwards propagation of the electrical signal from the measurement points to all the points in the mesh …

Computer science0206 medical engineeringBiomedical Engineering02 engineering and technology030204 cardiovascular system & hematologyPurkinje FibersSet (abstract data type)Automation03 medical and health sciences0302 clinical medicineHumansComputer SimulationSegmentationMolecular BiologyCardiac electrophysiologyMyocardiumApplied MathematicsModels Cardiovascular020601 biomedical engineeringAmplitudeComputational Theory and MathematicsModeling and SimulationAlgorithmAlgorithmsSoftwareEndocardiumInternational Journal for Numerical Methods in Biomedical Engineering
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Simple computation of the approximated modulation transfer function (MTF) using spreadsheet-software: method and evaluation in five maxillofacial CBC…

2019

OBJECTIVES: To develop a simple way to compute the approximated modulation transfer function (MTF) manually using conventional spreadsheet software. METHODS: Basing on an edge-image a method was developed, facilitating computation of the edge spread and line spread function in open-source spreadsheet software (Gnumeric; http://projects.gnome.org/gnumeric/downloads.shtml). By means of the integrated fast Fourier transformation Fourier coefficients are obtained from the line spread function which can then be plotted vs spatial frequency to obtain MTF-plots. For the experimental evaluation an edge test object was exposed in five commercial CBCT devices for maxillofacial applications. RESULTS: …

Computer science030218 nuclear medicine & medical imaging03 medical and health sciencessymbols.namesake0302 clinical medicineTechnical ReportSimple (abstract algebra)Optical transfer functionRadiography DentalHumansRadiology Nuclear Medicine and imagingGeneral DentistryDigital signal processingSimple computationbusiness.industrySpreadsheet softwarePhantoms ImagingComputer Science::Software EngineeringReproducibility of Results030206 dentistryGeneral MedicineSpiral Cone-Beam Computed TomographyRadiographic Image EnhancementFourier transformOtorhinolaryngologysymbolsbusinessAlgorithmSoftware
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PyDSC: a simple tool to treat differential scanning calorimetry data

2020

AbstractHerein, we describe an open-source, Python-based, script to treat the output of differential scanning calorimetry (DSC) experiments, called pyDSC, available free of charge for download at https://github.com/leonardo-chiappisi/pyDSC under a GNU General Public License v3.0. The main aim of this program is to provide the community with a simple program to analyze raw DSC data. Key features include the correction from spurious signals, and, most importantly, the baseline is computed with a robust, physically consistent approach. We also show that the baseline correction routine implemented in the script is significantly more reproducible than different standard ones proposed by propriet…

Computer science030303 biophysicsDSC03 medical and health sciencesSoftwareDifferential scanning calorimetryprotein conformationPhysical and Theoretical ChemistrySpurious relationshipReliability (statistics)0303 health sciencesReproducibilityInstrument controlSIMPLE (military communications protocol)business.industry030302 biochemistry & molecular biologypolymer stabilityCondensed Matter PhysicsKey featuresbaseline correction540 Chemie und zugeordnete Wissenschaftenphase transitionddc:540businessAlgorithmPython
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Approximate 3-Dimensional Electrical Impedance Imaging

2001

We discuss a new approach to three-dimensional electrical impedance imaging based on a reduction of the information to be demanded from a reconstruction algorithm. Images are obtained from a single measurement by suitably simplifying the geometry of the measuring chamber and by restricting the nature of the object to be imaged and the information required from the image. In particular we seek to establish the existence or non-existence of a single object (or a small number of objects) in a homogeneous background and the location of the former in the (x,y)-plane defined by the measuring electrodes. Given in addition the conductivity of the object rough estimates of its position along the z-a…

Computer scienceAcousticsSingle measurementGeneral Physics and AstronomyFOS: Physical sciencesReconstruction algorithmComputational Physics (physics.comp-ph)Object (computer science)Electrical impedance imagingPhysics - Medical PhysicsImage (mathematics)Reduction (complexity)HomogeneousPosition (vector)Medical Physics (physics.med-ph)Physics - Computational Physics
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Compression-based classification of biological sequences and structures via the Universal Similarity Metric: experimental assessment.

2007

Abstract Background Similarity of sequences is a key mathematical notion for Classification and Phylogenetic studies in Biology. It is currently primarily handled using alignments. However, the alignment methods seem inadequate for post-genomic studies since they do not scale well with data set size and they seem to be confined only to genomic and proteomic sequences. Therefore, alignment-free similarity measures are actively pursued. Among those, USM (Universal Similarity Metric) has gained prominence. It is based on the deep theory of Kolmogorov Complexity and universality is its most novel striking feature. Since it can only be approximated via data compression, USM is a methodology rath…

Computer scienceAlgorismesPrediction by partial matchingCompression dissimilaritycomputer.software_genreBiochemistryProtein Structure SecondaryPhylogenetic studiesStructural BiologySequence Analysis ProteinDatabases Proteinlcsh:QH301-705.5Biological dataNCDApplied MathematicsGenomicsClassificationCDComputer Science ApplicationsBenchmarking:Informàtica::Informàtica teòrica [Àrees temàtiques de la UPC]Universal compression dissimilarityArea Under CurveMetric (mathematics)lcsh:R858-859.7Data miningAlgorithmsData compressionResearch Article:Informàtica::Aplicacions de la informàtica::Bioinformàtica [Àrees temàtiques de la UPC]Normalization (statistics)lcsh:Computer applications to medicine. Medical informaticsBioinformatics Sequence Alignment AlgorithmsSet (abstract data type)Similarity (network science)Normalized compression sissimilarityData compression (Computer science)AnimalsHumansAmino Acid SequenceMolecular BiologyBiologyDades -- Compressió (Informàtica)USMUniversal similarity metricProteinsUCDProtein Structure TertiaryData setGenòmicaStatistical classificationlcsh:Biology (General)ROC CurvecomputerSequence AlignmentSoftwareBMC bioinformatics
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Errors Arising in Computer Simulation Methods

2014

The goal of this introductory chapter is to discuss in general terms different classes of errors arising in computer simulation methods and to direct the reader to the chapters and sections of the book where these errors are analyzed. Moreover, we describe the error estimation methodology applied in this book.

Computer scienceAlgorithmSimulation methods
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Cryptanalysis of Knapsack Cipher Using Ant Colony Optimization

2018

Ant Colony Optimization is a search metaheuristic inspired by the behavior of real ant colonies and shown their effectiveness, robustness to solve a wide variety of complex problems. In this paper, we present a novel Ant Colony Optimization (ACO) based attack for cryptanalysis of knapsack cipher algorithm. A Cipher-text only attack is used to discover the plaintext from the cipher-text. Moreover, our approach allows us to break knapsack cryptosystem in a minimum search space when compared with other techniques. Experimental results prove that ACO can be used as an effective tool to attack knapsack cipher.

Computer scienceAnt colony optimization algorithmsMathematicsofComputing_NUMERICALANALYSISMerkle–Hellman knapsack cryptosystemPlaintextData_CODINGANDINFORMATIONTHEORYAnt colonyComputingMethodologies_ARTIFICIALINTELLIGENCElaw.inventionKnapsack problemlawTheoryofComputation_ANALYSISOFALGORITHMSANDPROBLEMCOMPLEXITYCryptosystemCryptanalysisAlgorithmMetaheuristicSSRN Electronic Journal
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Guest Editors' Introduction to the Special Section on Algorithms in Bioinformatics

2008

Computer scienceApplied MathematicsComputational genomicsGeneticsSpecial sectionGenomicsAlgorithm designBioinformaticsBiological computationBiotechnologyComputational and Statistical GeneticsIEEE/ACM Transactions on Computational Biology and Bioinformatics
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