Search results for "algorithm"

A Combined Multi-Cohort Approach Reveals Novel and Known Genome-Wide Selection Signatures for Wool Traits in Merino and Merino-Derived Sheep Breeds.

2019

Merino sheep represents a valuable genetic resource worldwide. In this study, we investigated selection signatures in Merino (and Merino-derived) sheep breeds using genome-wide SNP data and two different approaches: a classical F-ST-outlier method and an approach based on the analysis of local ancestry in admixed populations. In order to capture the most reliable signals, we adopted a combined, multi-cohort approach. In particular, scenarios involving four Merino breeds (Spanish Merino, Australian Merino, Chinese Merino, and Sopravissana) were tested via the local ancestry approach, while nine pair-wise breed comparisons contrasting the above breeds, as well as the Gentile di Puglia breed, …

Special Issue on Computational Intelligence and Nature-Inspired Algorithms for Real-World Data Analytics and Pattern Recognition

2018

This special issue of Algorithms is devoted to the study of Computational Intelligence and Nature-Inspired Algorithms for Real-World Data Analytics and Pattern Recognition. The special issue considered both theoretical contributions able to advance the state-of-the-art in this field and practical applications that describe novel approaches for solving real-world problems.

System identification via optimised wavelet-based neural networks

2003

Nonlinear system identification by means of wavelet-based neural networks (WBNNs) is presented. An iterative method is proposed, based on a way of combining genetic algorithms (GAs) and least-square techniques with the aim of avoiding redundancy in the representation of the function. GAs are used for optimal selection of the structure of the WBNN and the parameters of the transfer function of its neurones. Least-square techniques are used to update the weights of the net. The basic criterion of the method is the addition of a new neurone, at a generic step, to the already constructed WBNN so that no modification to the parameters of its neurones is required. Simulation experiments and compa…

From a causal representation of multiloop scattering amplitudes to quantum computing in the Loop-Tree Duality

2023

La teoría cúantica de campos con enfoque perturbativo ha logrado de manera exitosa proporcionar predicciones teóricas increíblemente precisas en física de altas energías. A pesar del desarrollo de diversas técnicas con el objetivo de incrementar la eficiencia de estos cálculos, algunos ingredientes continuan siendo un verdadero reto. Este es el caso de las amplitudes de dispersión con lazos múltiples, las cuales describen las fluctuaciones cuánticas en los procesos de dispersión a altas energías. La Dualidad Lazo-Árbol (LTD) es un método innovador, propuesto con el objetivo de afrontar estas dificultades abriendo las amplitudes de lazo a amplitudes conectadas de tipo árbol. En esta tesis pr…

Multilayer perceptron training with multiobjective memetic optimization

2016

Machine learning tasks usually come with several mutually conflicting objectives. One example is the simplicity of the learning device contrasted with the accuracy of its performance after learning. Another common example is the trade-off that must often be made between the rate of false positive and false negative predictions in diagnostic applications. For computer programs that learn from data, these objectives are formulated as mathematical functions, each of which describes one facet of the desired learning outcome. Even functions that intend to optimize the same facet may behave in a subtly different and mutually conflicting way, depending on the task and the dataset being examined. Mul…

Compensated transfer entropy as a tool for reliably estimating information transfer in physiological time series

2013

We present a framework for the estimation of transfer entropy (TE) under the conditions typical of physiological system analysis, featuring short multivariate time series and the presence of instantaneous causality (IC). The framework is based on recognizing that TE can be interpreted as the difference between two conditional entropy (CE) terms, and builds on an efficient CE estimator that compensates for the bias occurring for high dimensional conditioning vectors and follows a sequential embedding procedure whereby the conditioning vectors are formed progressively according to a criterion for CE minimization. The issue of IC is faced accounting for zero-lag interactions according to two a…

Abonder une base EndNote avec un formulaire web et un courriel

2011

National audience; Cet article présente une façon originale d’abonder une base EndNote en limitant le nombre d’erreurs et les doubles saisies. Cette procédure permet d’utiliser un canal unique et d’avoir les informations utiles à leur exploitation. La saisie s’effectue via un formulaire disponible sur l’intranet de l’unité, les données sont intégrées dans un fichier XML et envoyées par courriel à la documentaliste avec éventuellement une pièce attachée pour intégration directe à la base avec la fonction import d’EndNote.

Best Practices in Constant pH MD Simulations: Accuracy and Sampling

2022

Various approaches have been proposed to include the effect of pH in molecular dynamics (MD) simulations. Among these, the λ-dynamics approach proposed by Brooks and co-workers [Kong, X.; Brooks III, C. L. J. Chem. Phys.1996, 105, 2414−2423] can be performed with little computational overhead and hfor each typeence be used to routinely perform MD simulations at microsecond time scales, as shown in the accompanying paper [Aho, N. et al. J. Chem. Theory Comput.2022, DOI: 10.1021/acs.jctc.2c00516]. At such time scales, however, the accuracy of the molecular mechanics force field and the parametrization becomes critical. Here, we address these issues and provide the community with guidelines on…

World as Numbers : Living in an Algorithmic Culture

2016

There is a long tradition of trying to grasp the world around us in mathematical terms. From early man perceiving the motion of celestial bodies, to Pythagoras’ ‘celestial harmony’ and to Kepler’s and Newton’s laws of motion, calculations have provided ways to reduce the messy world of instances to a handful of mathematical formulae. Einstein’s Relativity Theory, and even more the quantum physics, complicated the situation, but still, even with random elements involved, the statistics could provide a model to understand the processes of the universe. When calculations grew ever more complex, and computers became necessary tools to deal with them, this lead to the idea of seeing the whole of…

2020

Introduction Adolescents’ physical activity (PA) behavior can be driven by several psychosocial determinants at the same time. Most analyses use a variable-based approach that examines relations between PA-related determinants and PA behavior on the between-person level. Using this approach, possible coexistences of different psychosocial determinants within one person cannot be examined. Therefore, by applying a person-oriented approach, this study examined a) which profiles regarding PA-related psychosocial variables typically occur in female sixth-graders, b) if these profiles deliver a self-consistent picture according to theoretical assumptions, and c) if the profiles contribute to the…