Search results for "alignment"
showing 10 items of 627 documents
ISDR pattern and evolution in patients with chronic hepatitis C treated with standard or Peg-IFN plus ribavirin
2003
The aim of the study was to characterize the interferon sensitivity determining region (ISDR) mutation pattern and its changes at 4 weeks of treatment in a population of patients infected with hepatitis C virus (HCV) genotype 1b receiving standard or PEG-IFN plus ribavirin (RBV), to find possible early correlates of therapy outcome.Forty-five patients with chronic hepatitis due to HCV 1b were treated by PEG-IFN-α2b (n=23) or IFN-α2b (n=22) plus RBV 1000–1200 mg/day. They were classified 24 weeks after stopping therapy as sustained responders (SR), relapsers (REL) or non-responders (NR). Sixteen patients were SR, 12 REL and 17 NR. ISDR mutations were evaluated by direct sequencing at baselin…
Knee Control and Jump-Landing Technique in Young Basketball and Floorball Players
2015
Poor knee alignment is associated with increased loading of the joints, ligaments and tendons, and may increase the risk of injury. The study purpose was to compare differences in knee kinematics between basketball and floorball players during a vertical drop jump (VDJ) task. We wanted to investigate whether basketball players, whose sport includes frequent jump-landings, exhibited better knee control compared with floorball players, whose sport involves less jumping. Complete data was obtained from 173 basketball and 141 floorball players. Peak knee valgus and flexion angles during the VDJ were analyzed by 3D motion analysis.Larger knee valgus angles were observed among basketball players …
Role of individual's T cell immunome in controlling HIV-1 progression
2014
Viral and host factors can influence HIV-1 progression, among them human leucocyte antigen (HLA) has shown the strongest effect. However, studies on the functional contribution of HLA in controlling HIV progression toward AIDS are limited by multiple issues, including the viral strain variability within the study subjects. In this study, in a cohort of children infected with a monophyletic strain (CRF02_AG) during an outbreak, we evaluated the HIV-1 Gag, Vif, Vpr, Tat and hepatitis C virus E1/E2 (as control) proteins circulating in a cohort for the capability to be presented by the HLA molecules in the same population. A total of 70 Non-progressors and 37 Progressors to AIDS were evaluated.…
Formation of new genes explains lower intron density in mammalian Rhodopsin G protein-coupled receptors
2007
Mammalian G protein-coupled receptor (GPCR) genes are characterised by a large proportion of intronless genes or a lower density of introns when compared with GPCRs of invertebrates. It is unclear which mechanisms have influenced intron density in this protein family, which is one of the largest in the mammalian genomes. We used a combination of Hidden Markov Models (HMM) and BLAST searches to establish the comprehensive repertoire of Rhodopsin GPCRs from seven species and performed overall alignments and phylogenetic analysis using the maximum parsimony method for over 1400 receptors in 12 subgroups. We identified 14 different Ancestral Receptor Groups (ARGs) that have members in both vert…
Key Issues in EA-Implementation: Case Study of Two Finnish Government Agencies
2009
Enterprise Architecture (EA) is getting more common also in public sector as a means to ensure ‘business’ and IT alignment. This study reports a follow-up and theme interviews of the key actors/informants in two EA projects in public administration offices during and half year after the projects were completed. The early experience shows that the process of establishing a government EA is a tedious and complicated process and this study considers the root causes. Three set of factors are found hindering EA’s potential to operate as a strategic alignment tool: lack of establishing proper EA governance, insufficient support for the development, and inadequate resources to do the former two.
Weakly supervised alignment of multisensor images
2015
Manifold alignment has become very popular in recent literature. Aligning data distributions prior to product generation is an appealing strategy, since it allows to provide data spaces that are more similar to each other, regardless of the subsequent use of the transformed data. We propose a methodology that finds a common representation among data spaces from different sensors using geographic image correspondences, or semantic ties. To cope with the strong deformations between the data spaces considered, we propose to add nonlineari-ties by expanding the input space with Gaussian Radial Basis Function (RBF) features with respect to the centroids of a partitioning of the data. Such featur…
Locality-Sensitive Hashing for Massive String-Based Ontology Matching
2014
This paper reports initial research results related to the use of locality-sensitive hashing (LSH) for string-based matching of big ontologies. Two ways of transforming the matching problem into a LSH problem are proposed and experimental results are reported. The performed experiments show that using LSH for ontology matching could lead to a very fast matching process. The quality of the alignment achieved in these experiments is comparable to state-of-the-art matchers, but much faster. Further research is needed to find out whether the use of different metrics or specific hardware would improve the results. peerReviewed
Ordering and dewetting in spin-coated films of a liquid crystalline main chain polymer
2006
Abstract The ordering of spin-coated films of a main-chain smectic liquid crystalline polymer with an azobenzene group connected by flexible spacers to a phenyl malonate unit has been studied as a function of film thickness using scanning force microscopy and UV/Vis spectroscopy. Already the as-prepared films are characterized by a significant out-of-plane orientation of the azobenzene groups. Annealing of films thicker than 7 nm results in aggregation and homeotropical alignment of azobenzene groups forming smectic layers parallel to the substrate. An optically isotropic mesophase was found upon annealing in the temperature range of smectic mesophase. Films thinner than the bilayer thickne…
Isotropic-nematic interface and wetting in suspensions of colloidal platelets.
2006
We study interfacial phenomena in a colloidal dispersion of sterically stabilized gibbsite platelets, exhibiting coexisting isotropic and nematic phases separated by a sharp horizontal interface. The nematic phase wets a vertical glass wall and polarized light micrographs reveal homeotropic surface anchoring both at the free isotropic-nematic interface and at the wall. On the basis of complete wetting of the wall by the nematic phase, as found in our density functional calculations and computer simulations, we analyze the balance between Frank elasticity and surface anchoring near the contact line. Because of weak surface anchoring, the director field in the capillary rise region is uniform…
Towards tunable defect arrangements in smectic liquid crystal shells utilizing the nematic–smectic transition in hybrid-aligned geometries
2012
We produce and investigate liquid crystal shells with hybrid alignment—planar at one boundary, homeotropic at the other—undergoing a transition between the nematic (N) and smectic-A (SmA) phases. The shells display a dynamic sequence of patterns, the details depending on the alignment agents and on the diameter and thickness of the shell. In shells of sufficient diameter we typically find a transient striped texture near the N–SmA transition, stabilising into a pattern of tiled, more or less regularly spaced focal conic domains in the SmA phase. The domain size and spacing decrease with reduced shell thickness. In case of strong homeotropic anchoring at one boundary and small shell size, ho…