Search results for "alignment"
showing 10 items of 627 documents
Peptide classification using optimal and information theoretic syntactic modeling
2010
Accepted version of an article published in the journal: Pattern Recognition. Published version available on Sciverse: http://dx.doi.org/10.1016/j.patcog.2010.05.022 We consider the problem of classifying peptides using the information residing in their syntactic representations. This problem, which has been studied for more than a decade, has typically been investigated using distance-based metrics that involve the edit operations required in the peptide comparisons. In this paper, we shall demonstrate that the Optimal and Information Theoretic (OIT) model of Oommen and Kashyap [22] applicable for syntactic pattern recognition can be used to tackle peptide classification problem. We advoca…
IT Investment Decisions in Industry 4.0: Evidences from SMEs
2020
Organizational processes, production, business strategy, value creation and value delivery are undergoing significant change as a result of emerging new technologies in industry 4.0 context. This has drawn attention across many countries and not only organizations, but also stakeholders and policy makers as the fourth industrial revolution. While Industry 4.0 has been widely investigated in large enterprises, yet to date, little is known about how SMEs with limited financial resources make strategic decisions in particular about IT investment on diverse emerging technologies. To close this gap, this paper focused on the propensity of SMEs in IT investment in an industry 4.0 context. We anal…
Ontology languages for the semantic web: A never completely updated review
2006
This paper gives a never completely account of approaches that have been used for the research community for representing knowledge. After underlining the importance of a layered approach and the use of standards, it starts with early efforts used for artificial intelligence researchers. Then recent approaches, aimed mainly at the semantic web, are described. Coding examples from the literature are presented in both sections. Finally, the semantic web ontology creation process, as we envision it, is introduced.
Distance measures for biological sequences: Some recent approaches
2008
AbstractSequence comparison has become a very essential tool in modern molecular biology. In fact, in biomolecular sequences high similarity usually implies significant functional or structural similarity. Traditional approaches use techniques that are based on sequence alignment able to measure character level differences. However, the recent developments of whole genome sequencing technology give rise to need of similarity measures able to capture the rearrangements involving large segments contained in the sequences. This paper is devoted to illustrate different methods recently introduced for the alignment-free comparison of biological sequences. Goal of the paper is both to highlight t…
Expression of the human XPB/ERCC-3 excision repair gene-homolog in the sponge Geodia cydonium after exposure to ultraviolet radiation.
1998
Abstract The marine demosponge Geodia cydonium encodes a gene, termed GCXPB , which displays 62% identity to the human XPB/ERCC-3 gene that specifically corrects the repair defect in xeroderma pigmentosum and in Cockayne's syndrome. The cDNA was isolated and characterized the deduced aa sequence, XPB_GEOCY, with the calculated size of 91,541 Da comprises the characteristic domains found in the related helicases. Phylogenetic tree analysis revealed that the sponge sequence is grouped to the metazoan related XPB/ERCC-3 polypeptides. Northern Blot analyses have been performed with sponge samples collected at different depths, thus exposed to different intensities of UV sunlight in the field. T…
Observation of laser-induced field-free permanent planar alignment of molecules
2011
International audience; Permanent planar alignment of gas-phase linear molecules is achieved by a pair of delayed perpendicularly polarized short laser pulses. The experiment is performed in a supersonic jet, ensuring a relatively high number density of molecules with moderately low rotational temperature. The effect is optically probed on a femtosecond time scale by the use of a third short pulse, enabling a time-resolved birefringence detection performed successively in two perpendicular planes of the laboratory frame. The technique allows for an unambiguous estimation of the molecular planar delocalization produced within the polarization plane of the pulse pair after the turn-off of the…
Representing and Reasoning for Spatiotemporal Ontology Integration
2004
International audience; The World-Wide Web hosts many autonomous and heterogeneous information sources. In the near future each source may be described by its own ontology. The distributed nature of ontology development will lead to a large number of local ontologies covering overlapping domains. Ontology integration will then become an essential capability for effective interoperability and information sharing. Integration is known to be a hard problem, whose complexity increases particularly in the presence of spatiotemporal information. Space and time entail additional problems such as the heterogeneity of granularity used in representing spatial and temporal features. Spatio-temporal ob…
Higher-order Kerr terms allow ionization-free filamentation in gases
2010
International audience; We show that higher-order nonlinear indices (n4 , n6 , n8 , n10) provide the main defocusing contribution to self-channeling of ultrashort laser pulses in air and Argon at 800 nm, in contrast with the previously accepted mechanism of filamentation where plasma was considered as the dominant defocusing process. Their consideration allows to reproduce experimentally observed intensities and plasma densities in self-guided filaments.
Laser induced field-free molecular alignment
2008
Talk given by O. Faucher; International audience
Field-free molecular alignment of ethylene
2007
Talk given by O. Faucher; International audience