Search results for "angle"

showing 10 items of 1921 documents

Theory of Near‐field Optical Imaging with a Single Molecule as Light Source

2002

Scanning near-field optical microscopes (SNOM) illuminate a sample in the very near-field using a nanometer sized tip. Ideally, the light source should be point-like and many efforts have been made to optimize tip efficiency (see, for example, the article of Heimel et al in this issue). Very recently, Sandoghdar et al have realized a molecular probe tip in which a terrylene molecule inserted in a paraterphenyl microcrystal is attached at the extremity of the probe tip [1]. The excited molecule behaves as a point-like light source which is raster scanned over an aluminium patterned structure. We propose here an analysis of this experiment based on the field-susceptibility formalism (also cal…

Microscopebusiness.industryChemistryClinical BiochemistrySolid angleNear and far fieldGeneral ChemistryGeneral Biochemistry Genetics and Molecular Biologylaw.inventionDipoleOpticslawElectric fieldNear-field scanning optical microscopeAtomic physicsScanning tunneling microscopePhotonicsbusinessMolecular BiologySingle Molecules
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PETTERDITE, THE Cr-DOMINANT ANALOGUE OF DUNDASITE, A NEW MINERAL SPECIES FROM DUNDAS, TASMANIA, AUSTRALIA AND CALLENBERG, SAXONY, GERMANY

2000

Petterdite is a newly discovered hydrated lead chromium hydroxyl carbonate, the Cr 3+ -dominant analogue of dundasite, with a formula PbCr 2 (CO 3 ) 2 (OH) 4 ·H 2 O. The type locality is the Red Lead mine, on the Zeehan–Dundas mining field in northwestern Tasmania, Australia. The mineral also occurs in small amounts at the Callenberg nickel deposit, Saxony, Germany. Petterdite forms thin crusts made up of tiny platy crystals up to about 15 μm across, associated with crocoite and anglesite at the type locality, and with crocoite, cerussite, bindheimite, pyromorphite, and relict galena at Callenberg. The petterdite crusts are pale greyish to pinkish violet and non-fluorescent; they have an ea…

Mineralchemistry.chemical_elementengineering.materialCrocoiteCrystallographyPyromorphiteChromiumchemistryGeochemistry and PetrologyGalenaAnglesiteengineeringPleochroismMohs scale of mineral hardnessThe Canadian Mineralogist
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Silence of Binary Kerr Black Holes

2020

A nontrivial S matrix generally implies a production of entanglement: starting with an incoming pure state, the scattering generally returns an outgoing state with nonvanishing entanglement entropy. It is then interesting to ask if there exists a nontrivial S matrix that generates no entanglement. In this Letter, we argue that the answer is the S-matrix for the scattering of classical black holes. We study the spin entanglement in the scattering of arbitrary spinning particles. Augmenting the S-matrix with Thomas–Wigner rotation factors, we derive the entanglement entropy from the gravitational induced 2→2 amplitude. In the Eikonal limit, we find that the relative entanglement entropy, defi…

Minimal couplingBlack holePhysicsRotating black holeQuantum mechanicsWigner rotationGeneral Physics and AstronomyQuantum entanglementQuantum PhysicsMultipole expansionClassical limitS-matrixPhysical Review Letters
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Structure of the Human TRPML2 Ion Channel Extracytosolic/Lumenal Domain.

2019

Summary TRPML2 is the least structurally characterized mammalian transient receptor potential mucolipin ion channel. The TRPML family hallmark is a large extracytosolic/lumenal domain (ELD) between transmembrane helices S1 and S2. We present crystal structures of the tetrameric human TRPML2 ELD at pH 6.5 (2.0 A) and 4.5 (2.95 A), corresponding to the pH values in recycling endosomes and lysosomes. Isothermal titration calorimetry shows Ca2+ binding to the highly acidic central pre-pore loop which is abrogated at low pH, in line with a pH-dependent channel regulation model. Small angle X-ray scattering confirms the ELD dimensions in solution. Changes in pH or Ca2+ concentration do not affect…

Models Molecular0303 health sciencesBinding SitesTRPMLEndosomeChemistrySmall-angle X-ray scatteringProtein Conformation030302 biochemistry & molecular biologyIsothermal titration calorimetryHydrogen-Ion ConcentrationCrystallography X-Ray03 medical and health sciencesTransient receptor potential channelTransmembrane domainTransient Receptor Potential ChannelsProtein DomainsStructural BiologyBiophysicsHumansCalciumMolecular BiologyProtein secondary structureIon channel030304 developmental biologyStructure (London, England : 1993)
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Morphology of hybrid polystyrene-block-poly(ethylene oxide) micelles: Analytical ultracentrifugation and SANS studies

2006

Abstract Morphology and structure of aqueous block copolymer solutions based on polystyrene- block -poly(ethylene oxide) (PS- b -PEO) of two different compositions, a cationic surfactant, cetyl pyridinium chloride (CPC), and either platinic acid (H 2 PtCl 6 ⋅6H 2 O) or Pt nanoparticles were studied using a combination of analytical ultracentrifugation (AUC), transmission electron microscopy (TEM), and small angle neutron scattering (SANS). These studies combining methods contributing supplemental and analogous structural information allowed us to comprehensively characterize the complex hybrid systems and to discover an isotope effect when H 2 O was replaced with D 2 O. In particular, TEM s…

Models MolecularBlock copolymerHybrid micellesMicellePolyethylene GlycolsBiomaterialsSurface-Active Agentschemistry.chemical_compoundColloid and Surface ChemistrySurfactantPolymer chemistryCopolymerMicellesAqueous solutionCalorimetry Differential ScanningEthylene oxideIsotope effectCationic polymerizationSmall-angle neutron scatteringSurfaces Coatings and FilmsElectronic Optical and Magnetic MaterialsMicroscopy ElectronchemistryPolystyrenesPhysical chemistryPolystyrenePyridiniumUltracentrifugationJournal of Colloid and Interface Science
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The mechanism of binding staphylococcal protein A to immunoglobin G does not involve helix unwinding.

1996

Structural changes in staphylococcal protein A (SpA) upon its binding to the constant region (Fc) of immunoglobulin G (IgG) have been studied by nuclear magnetic resonance and circular dichroism (CD) spectroscopy. The NMR solution structure of the engineered IgG-binding domain of SpA, the Z domain (an analogue of the B domain of SpA), has been determined by simulated annealing with molecular dynamics, using 599 distance and dihedral angle constraints. Domain Z contains three alpha-helices in the polypeptide segments Lys7 to His18 (helix 1), Glu25 to Asp36 (helix 2), and Ser41 to Ala54 (helix 3). The overall chain fold is an antiparallel three-helical bundle. This is in contrast to the previ…

Models MolecularCircular dichroismProtein FoldingMagnetic Resonance SpectroscopyStereochemistryMolecular Sequence DataPlasma protein bindingDihedral angleBiochemistryProtein Structure SecondaryProtein structureComputer GraphicsAmino Acid SequenceBinding siteStaphylococcal Protein ABinding SitesChemistryCircular DichroismNuclear magnetic resonance spectroscopyRecombinant ProteinsImmunoglobulin Fc FragmentsModels StructuralCrystallographyIgG bindingImmunoglobulin GMutagenesis Site-DirectedProtein foldingProtein BindingBiochemistry
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Flexible Structure of Peptide-Bound Filamin A Mechanosensor Domain Pair 20-21.

2015

Filamins (FLNs) are large, multidomain actin cross-linking proteins with diverse functions. Besides regulating the actin cytoskeleton, they serve as important links between the extracellular matrix and the cytoskeleton by binding cell surface receptors, functioning as scaffolds for signaling proteins, and binding several other cytoskeletal proteins that regulate cell adhesion dynamics. Structurally, FLNs are formed of an amino terminal actin-binding domain followed by 24 immunoglobulin-like domains (IgFLNs). Recent studies have demonstrated that myosin-mediated contractile forces can reveal hidden protein binding sites in the domain pairs IgFLNa18-19 and 20-21, enabling FLNs to transduce me…

Models MolecularDIMERIZATIONMagnetic Resonance SpectroscopyFilaminsProtein domainlcsh:MedicinePlasma protein bindingmacromolecular substancesBiologyMyosinsFilaminCrystallography X-RayLigandsfilaminsFORCEProtein structureAUTO-INHIBITIONBINDINGEscherichia coliCytoskeletonPHOSPHORYLATIONlcsh:ScienceCytoskeletonFRAGMENTMultidisciplinaryBinding Siteslcsh:Rta1182Signal transducing adaptor proteinfilamiinitSMALL-ANGLE SCATTERINGActin cytoskeletonActinsRecombinant ProteinsCell biologyProtein Structure TertiaryMODELBIOLOGICAL MACROMOLECULESCytoskeletal Proteinspeptiditpeptides1182 Biochemistry cell and molecular biologylcsh:QPeptidesINTEGRINBinding domainProtein BindingResearch ArticlePloS one
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All hierarchical levels are involved in conformational transitions of the 4×6-meric tarantula hemocyanin upon oxygenation

2002

The respiratory protein of the tarantula Eurypelma californicum is a 4 x 6-meric hemocyanin that binds oxygen with high cooperativity. This requires the existence of different conformations which have been confirmed by small angle X-ray scattering (SAXS). Here we present reconstructed 3D-models of the oxy- and deoxy-forms of tarantula hemocyanins, as obtained by fitting small angle X-rays scattering curves on the basis of known X-ray structures and electron microscopy of related hemocyanins. For the first time, the involvement of movements at all levels of the quaternary structure was confirmed for an arthropod hemocyanin upon oxygenation. The two identical 2 x 6-meric half-molecules of the…

Models MolecularMacromolecular SubstancesProtein Conformationmedicine.medical_treatmentAllosteric regulationBiophysicsCooperativityRandom hexamerBiochemistryOligomerAnalytical Chemistrychemistry.chemical_compoundmedicineAnimalsMolecular BiologySmall-angle X-ray scatteringSpidersHemocyaninOxygenRespiratory proteinCrystallographychemistryHemocyaninsProtein quaternary structureOxidation-ReductionProtein BindingBiochimica et Biophysica Acta (BBA) - Proteins and Proteomics
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Influence of Whole-Body Dynamics on 15N PISEMA NMR Spectra of Membrane Proteins: A Theoretical Analysis

2009

AbstractMembrane proteins and peptides exhibit a preferred orientation in the lipid bilayer while fluctuating in an anisotropic manner. Both the orientation and the dynamics have direct functional implications, but motions are usually not accessible, and structural descriptions are generally static. Using simulated data, we analyze systematically the impact of whole-body motions on the peptide orientations calculated from two-dimensional polarization inversion spin exchange at the magic angle (PISEMA) NMR. Fluctuations are found to have a significant effect on the observed spectra. Nevertheless, wheel-like patterns are still preserved, and it is possible to determine the average peptide til…

Models MolecularMagic angleRotationGaussianLipid BilayersNormal DistributionBiophysicsMolecular physicsProtein Structure SecondarySpectral lineQuantitative Biology::Subcellular ProcessesMolecular dynamicssymbols.namesakeNuclear magnetic resonanceOrientationComputer SimulationLipid bilayerAnisotropyNuclear Magnetic Resonance BiomolecularQuantitative Biology::BiomoleculesChemistryMembranePolarization (waves)AmplitudesymbolsDimyristoylphosphatidylcholinePeptidesBiophysical Journal
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Organometallic Oligomers Based on Bis(arylacetylide)bis(P-chirogenic phosphine)platinum(II) Complexes: Synthesis and Photonic Properties

2013

A series of P-chirogenic oligomers of the type (-C≡C-aryl-C≡C-PtL2-)n [L = (R)- and (S)-P(Ph)(iPr)(C17H35); aryl = 1,4-benzene, 2,1,3-benzothiadiazole] along the corresponding achiral analogues (L = PBu3) and model complexes PhC≡CPtL2C≡CPh were prepared from the ephedrine strategy and were fully characterized [(1)H, (31)P NMR; IR; small-angle X-ray scattering (SAXS); gel permeation chromatography (GPC); thermal gravimetric analysis (TGA); circular dichroism, UV-vis, and luminescence spectroscopy; photophysics, and degree of anisotropy measurements]. From the CD measurements, the chiral environment of the phosphine ligands is modestly felt by the aryl moieties. Concurrently, the TGA shows th…

Models MolecularPhotonsCircular dichroismThermogravimetric analysisMolecular StructureOrganoplatinum CompoundsAcetylenePhosphinesSmall-angle X-ray scatteringChemistryLigandArylMolecular Dynamics SimulationPhotochemistryInorganic ChemistryGel permeation chromatographychemistry.chemical_compoundPolymer chemistryPhysical and Theoretical ChemistryLuminescencePhosphineInorganic Chemistry
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