Search results for "anharmonicity"
showing 10 items of 118 documents
A MRCI PS and CASSCF study of the ground state MgO dissociation energy
1991
Abstract Ab initio calculations at CASSCF and MRCI PS levels are used to determine the dissociation energy for the X 1 Σ + state of MgO, which adiabatically dissociates to the ground state 1 S g of magnesium and to the excited 1 D g state of oxygen, as well as other spectroscopic parameters. Emphasis is placed upon the problem of properly selecting an adequate active space in CASSCF calculations and upon the improvements obtained in MRCI by selecting perturbatively the most important contributions to the total wavefunction and evaluating the remaining ones only by perturbational method. Through a procedure based on stabilizing the computed dissociation energy, values of 3.87 eV (MRCI PS) an…
Direct Evidence of the Amino Acid Side Chain and Backbone Contributions to Protein Anharmonicity
2010
Elastic incoherent neutron scattering has been used to study the temperature dependence of the mean-square displacements of nonexchangeable hydrogen atoms in powders of a series of homomeric polypeptides (polyglycine, polyalanine, polyphenylalanine and polyisoleucine) in comparison with myoglobin at the same hydration level (h = 0.2). The aim of the work was to measure the dynamic behavior of different amino acid residues separately and assess the contribution of each type of side chain to the anharmonic dynamics of proteins. The results provide direct experimental evidence that the first anharmonic activation, at approximately 150 K, is largely due to methyl group rotations entering the ti…
Anharmonic vibrational frequency calculations for solvated molecules in the B3LYP Kohn–Sham basis set limit
2012
Abstract The solvent dependence of harmonic and anharmonic vibrational wavenumbers of water, formaldehyde and formamide was studied using the B3LYP method. The results obtained with the hierarchy of Jensen's polarization-consistent basis sets were fitted with two-parameter formula toward the B3LYP Kohn–Sham complete basis set (CBS) limit. Anharmonic corrections have been obtained by a second order perturbation treatment (VPT2) and vibrational configuration interaction (VCI) method. The solvent environment was treated according to the self-consistent reaction field polarizable continuum model (SCRF PCM) approach.
Rigid versus Flexible Protein Matrix: Light-Harvesting Complex II Exhibits a Temperature-Dependent Phonon Spectral Density
2018
Dynamics-function correlations are usually inferred when molecular mobility and protein function are simultaneously impaired at characteristic temperatures or hydration levels. In this sense, excitation energy transfer in the photosynthetic light-harvesting complex II (LHC II) is an untypical example because it remains fully functional even at cryogenic temperatures relying mainly on interactions of electronic states with protein vibrations. Here, we study the vibrational and conformational protein dynamics of monomeric and trimeric LHC II from spinach using inelastic neutron scattering (INS) in the temperature range of 20-305 K. INS spectra of trimeric LHC II reveal a distinct vibrational …
Replica field theory for anharmonic sound attenuation in glasses
2011
Abstract A saddle-point treatment of interacting phonons in a disordered environment is developed. In contrast to crystalline solids, anharmonic attenuation of density fluctuations becomes important in the hydrodynamic regime, due to a broken momentum conservation. The variance of the shear modulus Δ2 turns out to be the strength of the disorder enhanced phonon–phonon interaction. In the low-frequency regime (below the boson peak frequency) we obtain an Akhiezer-like sound attenuation law Γ ∝ Τω2. Together with the usual Rayleigh scattering mechanism this yields a crossover of the Brillouin linewidth from a ω2 to a ω4 regime. The crossover frequency ωc is fully determined by the boson peak …
Pressure measurements of TO-phonon anharmonicity in isotopic ZnS
2004
We have measured the dependence on pressure of the line-widths of the TO and LO Raman phonons of β-ZnS. In order to enhance the phenomena observed, and to eliminate possible effects of isotopic disorder, we have measured a nearly isotopically pure crystal, 68 Zn 32 S. The strongly structured pressure effects observed are interpreted on the basis of anharmonic decay and the corresponding two-phonon density of states.
Raman scattering study of the anharmonic effects in CeO2−ynanocrystals
2007
We have studied the temperature dependence of the F2g Raman mode phonon frequency and broadening in CeO2−y nanocrystals. The phonon softening and phonon linewidth are calculated using a model which takes into account the three-and four-phonon anharmonic processes. A detailed comparison of the experimental data with theoretical calculations revealed the predominance of four-phonon anharmonic processes in the temperature dependence of the phonon energy and broadening of the nanocrystals. On the other hand, three-phonon processes dominate the temperature behavior of phonons in polycrystalline samples. The anti-Stokes/Stokes peak intensity ratio was also investigated and found to be smaller for…
Anharmonicity deformation and curvature in supersymmetric potentials
1994
An algebraic description of the class of 1D supersymmetric shape invariant potentials is investigated in terms of the shape-invariant-potential (SIP) deformed algebra, the generators of which act both on the dynamical variable and on the parameters of the potentials. The phase space geometry associated with SIP's is studied by means of a coherent state (SIP-CS) path integral and the ray metric of the SIP-CS manifold. The anharmonicity of SIP's results in a inhomogeneous phase space manifold with one Killing vector and with a modified symplectic Kahler structure, and it induces a non constant curvature into the generalized phase space. Analogous results from the phase space geometry of someq…
Anharmonic force fields from analytic CCSD(T) second derivatives: HOF and F2O
1999
The recent implementation of analytic second derivatives for CCSD(T) (coupled cluster theory with single and double excitations augmented by a perturbational treatment of connected triple excitations) has been combined with a numerical finite difference procedure to calculate cubic and semidiagonal quartic force fields. Computational details of this approach are outlined. Applications are reported for HOF and F2O. The CCSD(T) results are in excellent agreement with experiment and represent a substantial improvement over the results obtained from MP2 (Mo/ller–Plesset second-order perturbation theory).
Theoretical prediction of nuclear magnetic shieldings and indirect spin-spin coupling constants in 1,1-, cis-, and trans-1,2-difluoroethylenes.
2014
A theoretical prediction of nuclear magnetic shieldings and indirect spin-spin coupling constants in 1,1-, cis- and trans-1,2-difluoroethylenes is reported. The results obtained using density functional theory (DFT) combined with large basis sets and gauge-independent atomic orbital calculations were critically compared with experiment and conventional, higher level correlated electronic structure methods. Accurate structural, vibrational, and NMR parameters of difluoroethylenes were obtained using several density functionals combined with dedicated basis sets. B3LYP/6-311++G(3df,2pd) optimized structures of difluoroethylenes closely reproduced experimental geometries and earlier reported b…