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Potential risk evaluation for unintended entry of genetically modified plant Propagating material in Europe through import of seeds and animal feed –…

2019

Significant attention has been drawn to the adventitious and technically unavoidable presence of genetically modified (GM) organisms in the food and feed imported into the European Union (EU), while the potential presence of GM seeds in material for cultivation is less studied. Here we report a study from an EU member state, Latvia, during years 2017–2018 regarding monitoring for the presence of GM seeds in certified seed and animal feed material. Eighty-two and 28 samples of seeds intended for cultivation were analyzed in 2017 and 2018, respectively. One soybean sample contained MON40-3-2 soybean seeds (0.09 ± 0.01%) and one maize sample contained MON810 maize seeds (0.08 ± 0.01%). In addi…

0106 biological sciences0301 basic medicineAnimal feedFood Genetically ModifiedFood ContaminationGerminationGenetically modified cropsBiology01 natural sciencesZea mays03 medical and health sciencesmedia_common.cataloged_instanceAnimalsEuropean UnionEuropean unionmedia_commonbusiness.industryPotential riskPlants Genetically ModifiedAnimal FeedLatviaGenetically modified organismBiotechnology030104 developmental biologySeedsSoybeansbusinessAgronomy and Crop Science010606 plant biology & botanyFood ScienceBiotechnologyResearch Paper
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Gametic and somatic embryogenesis through in vitro anther culture of different Citrus genotypes

2015

Abstract: In vitro tissue culture represents a useful technique for advancing Citrus breeding and propagation. Among in vitro regeneration systems, anther culture is commonly used to produce haploids and doubled haploids for a fast-track producing homozygous lines, in comparison with the traditional self-pollination approach, which involves several generations of selfing. In addition, anthers culture can produce somatic embryos that can also be used for clonal propagation. In this study, two thermal shocks were applied to the anthers of six Citrus genotypes (two clementine and four sweet oranges), just after they were put in culture. The response obtained was different depending on the geno…

0106 biological sciences0301 basic medicineAnther cultureSomatic embryogenesiscytofluorometryEvolutionStamenPlant ScienceBiology01 natural sciences03 medical and health sciencesTissue cultureBehavior and Systematicsmicrospore embryogenesiBotanyCultivarEcology Evolution Behavior and SystematicsEcologyfungiAnther culture; cytofluorometry; homozygosity; microspore embryogenesis; ploidy level; Ecology Evolution Behavior and Systematics; Plant Sciencefood and beveragesSelfingEmbryoploidy levelEcology Evolution Behavior and SystematicSettore AGR/03 - Arboricoltura Generale E Coltivazioni Arboree030104 developmental biologymicrospore embryogenesisPloidyhomozygosityClementine010606 plant biology & botany
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Deregulated High Affinity Copper Transport Alters Iron Homeostasis inArabidopsis

2020

The present work describes the effects on iron homeostasis when copper transport was deregulated in Arabidopsis thaliana by overexpressing high affinity copper transporters COPT1 and COPT3 (COPTOE). A genome-wide analysis conducted on COPT1OE plants, highlighted that iron homeostasis gene expression was affected under both copper deficiency and excess. Among the altered genes were those encoding the iron uptake machinery and their transcriptional regulators. Subsequently, COPTOE seedlings contained less iron and were more sensitive than controls to iron deficiency. The deregulation of copper (I) uptake hindered the transcriptional activation of the subgroup Ib of basic helix-loop-helix (bHL…

0106 biological sciences0301 basic medicineArabidopsis thalianaPlant Sciencelcsh:Plant culture01 natural sciencesHigh affinity copper importer 103 medical and health sciencesIron homeostasisCopper uptakeArabidopsisIron homeostasisBIOQUIMICA Y BIOLOGIA MOLECULARmedia_common.cataloged_instanceArabidopsis thalianalcsh:SB1-1110European unionmedia_commonbiologyChemistryHigh affinity copper transportbiology.organism_classificationCell biologyMetal mobilization030104 developmental biologyChristian ministryMetal mobilizationMetal interactions010606 plant biology & botany
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The transcriptomics of an experimentally evolved plant-virus interaction

2015

[EN] Models of plant-virus interaction assume that the ability of a virus to infect a host genotype depends on the matching between virulence and resistance genes. Recently, we evolved tobacco etch potyvirus (TEV) lineages on different ecotypes of Arabidopsis thaliana, and found that some ecotypes selected for specialist viruses whereas others selected for generalists. Here we sought to evaluate the transcriptomic basis of such relationships. We have characterized the transcriptomic responses of five ecotypes infected with the ancestral and evolved viruses. Genes and functional categories differentially expressed by plants infected with local TEV isolates were identified, showing heterogene…

0106 biological sciences0301 basic medicineArabidopsis thalianaPotyvirusArabidopsisFalse discovery rateLong-distance movementGeneralist and specialist species01 natural sciencesArticle03 medical and health sciencesPlant virusViral emergencePlant defense against herbivoryArabidopsis thalianaGeneticsEcotypeMultidisciplinarybiologyEcotypePlum pox virusTobacco etch virusGene Expression ProfilingfungiPotyvirusfood and beveragesTobacco-ETCH-virusbiology.organism_classification030104 developmental biologyExperimental evolutionABC transportersHost-Pathogen InteractionsGene expressionAdaptationChloroplast proteome010606 plant biology & botany
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PGDH family genes differentially affect Arabidopsis tolerance to salt stress

2019

The first step in the Phosphorylated Pathway of serine (Ser) Biosynthesis (PPSB) is catalyzed by the enzyme Phosphoglycerate Dehydrogenase (PGDH), coded in Arabidopsis thaliana by three genes. Gene expression analysis indicated that PGDH1 and PGDH2 were induced, while PGDH3 was repressed, by salt-stress. Accordingly, PGDH3 overexpressing plants (Oex PGDH3) were more sensitive to salinity than wild type plants (WT), while plants overexpressing PGDH1 (Oex PGDH1) performed better than WT under salinity conditions. Oex PGDH1 lines displayed lower levels of the salt-stress markers proline and raffinose in roots than WT under salt-stress conditions. Besides, the ratio of oxidized glutathione (GSS…

0106 biological sciences0301 basic medicineArabidopsisPlant SciencePlant Roots01 natural sciencesSerine03 medical and health scienceschemistry.chemical_compoundBiosynthesisGene Expression Regulation PlantArabidopsisGene expressionGeneticsArabidopsis thalianaPhosphoglycerate dehydrogenaseProlinePhosphoglycerate DehydrogenasebiologyArabidopsis ProteinsWild typeSalt ToleranceGeneral Medicinebiology.organism_classification030104 developmental biologychemistryBiochemistryMultigene FamilyAgronomy and Crop Science010606 plant biology & botanyPlant Science
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Mycorrhizal symbiosis primes the accumulation of antiherbivore compounds and enhances herbivore mortality in tomato

2021

Abstract Plant association with arbuscular mycorrhizal fungi (AMF) can increase their ability to overcome multiple stresses, but their impact on plant interactions with herbivorous insects is controversial. Here we show higher mortality of the leaf-chewer Spodoptera exigua when fed on tomato plants colonized by the AMF Funneliformis mosseae, evidencing mycorrhiza-induced resistance. In search of the underlying mechanisms, an untargeted metabolomic analysis through ultra-performance liquid chromatography tandem mass spectrometry (UPLC-MS) was performed. The results showed that mycorrhizal symbiosis had a very limited impact on the leaf metabolome in the absence of stress, but significantly m…

0106 biological sciences0301 basic medicineAzelaic acidPhysiologyPlant Science01 natural sciences03 medical and health sciencesMetabolomicsSolanum lycopersicumSymbiosisTandem Mass SpectrometrySpodoptera exiguaMycorrhizaeBotanyExiguamedicineMetabolomeAnimalsMetabolomicsmycorrhiza induced resistanceHerbivoryArbuscular mycorrhizaSymbiosisHerbivorebiologyAcademicSubjects/SCI01210AlkaloidfungiFungifood and beveragesbiology.organism_classificationResearch PapersArbuscular mycorrhizaspodoptera exigua030104 developmental biologyDefence primingPlant—Environment InteractionsMycorrhiza induced resistance Spodoptera exiguaChromatography Liquid010606 plant biology & botanymedicine.drug
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Clonal populations of Clavibacter michiganensis subsp michiganensis are responsible for the outbreaks of bacterial canker in greenhouse tomatoes in I…

2015

Clavibacter michiganensis subsp. michiganensis (Cmm) strains, collected in greenhouses from 17 farms during tomato bacterial canker outbreaks occurring between 2005 and 2008 in Sicily, were analysed by a multiphasic approach. Population studies were conducted to investigate the possible sources of inocula. Cmm strains were characterized by PCR assays targeting virulence genes, fingerprinting techniques, metabolic profiles and virulence. These strains were comparatively analysed with Cmm strains isolated in other parts of Italy over a period of 15 years. Chromosomal genes encoding virulence determinants tomA, ppaA, chpC, and the plasmid-encoded genes pat-1 and celA were detected by PCR in al…

0106 biological sciences0301 basic medicineBacterial cankerBOX-PCR; Clavibacter michiganensis subsp; michiganensis; fAFLP; polyphasic characterization; tomato bacterial wilt and cankerClavibacter michiganensis subsp030106 microbiologyPopulationVirulencePlant ScienceHorticultureBiologySubspeciesfAFLP01 natural sciencesPolyphasic characterizationMicrobiologyClavibacter michiganensis subsp. michiganensi03 medical and health sciencesmichiganensisGeneticseducationGeneBOX-PCReducation.field_of_studyHaplotypeOutbreakSettore AGR/12 - Patologia VegetaleTomato bacterial wilt and cankerbiology.organism_classificationAgronomy and Crop ScienceClavibacter michiganensis010606 plant biology & botany
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A Metabarcoding Survey on the Fungal Microbiota Associated to the Olive Fruit Fly.

2017

The occurrence of interaction between insects and fungi is interesting from an ecological point of view, particularly when these interactions involve insect pests and plant pathogens within an agroecosystem. In this study, we aimed to perform an accurate analysis on the fungal microbiota associated to Bactrocera oleae (Rossi) through a metabarcoding approach based on 454 pyrosequencing. From this analysis, we retrieved 43,549 reads that clustered into 128 operational taxonomic units (OTUs), of which 29 resulted in the “core” associate fungi of B. oleae. This fungal community was mainly represented by sooty mould fungi, such as Cladosporium spp., Alternaria spp. and Aureobasidium spp., by pl…

0106 biological sciences0301 basic medicineBactrocera oleaeOlive fruit flySoil ScienceAureobasidium01 natural sciences03 medical and health sciencesMicrobial ecologyPseudocercospora454 PyrosequencingAscomycotaOleaBotanyColletotrichumAnimalsDNA Barcoding TaxonomicPseudocercosporaEcology Evolution Behavior and SystematicsEcological nicheHigh-throughput sequencingEcologybiologyBase SequenceEcologyfungiTephritidaefood and beveragesSettore AGR/12 - Patologia VegetaleAlternariaHigh-Throughput Nucleotide SequencingSequence Analysis DNAbiology.organism_classificationAlternaria030104 developmental biologySettore AGR/11 - Entomologia Generale E ApplicataColletotrichumDNA Intergenic454 Pyrosequencing; Bactrocera oleae; Cladosporium; Colletotrichum; High-throughput sequencing; PseudocercosporaCladosporium010606 plant biology & botanyCladosporiumMycobiomeMicrobial ecology
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New national and regional bryophyte records, 56

2018

WOS: 000441652000006

0106 biological sciences0301 basic medicineBarbula amplexifoliaForestryPlant Science030108 mycology & parasitology01 natural sciences03 medical and health sciencesGeographyBryophyte[SDE.BE]Environmental Sciences/Biodiversity and EcologyEcology Evolution Behavior and SystematicsComputingMilieux_MISCELLANEOUS010606 plant biology & botany
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Specimens at the Center: An Informatics Workflow and Toolkit for Specimen-level analysis of Public DNA database data

2016

Pham, Kasey K. [et al.]

0106 biological sciences0301 basic medicineBiodiversityPlant ScienceComputational biologyBiology010603 evolutionary biology01 natural sciencesSet (abstract data type)03 medical and health sciencesBotanyDNA databaseGeneticsSupermatrixEcology Evolution Behavior and SystematicsPhylogenetic treePhylogenetic workflowTaxon disparity index (TDI)030104 developmental biologyWorkflowCarexGenBankIdentity (object-oriented programming)CyperaceaeSupermatrixSpecimen-level data
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