Search results for "arrangement."

showing 10 items of 343 documents

Molecular Rearrangement of an Aza-Scorpiand Macrocycle Induced by pH: A Computational Study †

2016

Rearrangements and their control are a hot topic in supramolecular chemistry due to the possibilities that these phenomena open in the design of synthetic receptors and molecular machines. Macrocycle aza-scorpiands constitute an interesting system that can reorganize their spatial structure depending on pH variations or the presence of metal cations. In this study, the relative stabilities of these conformations were predicted computationally by semi-empirical and density functional theory approximations, and the reorganization from closed to open conformations was simulated by using the Monte Carlo multiple minimum method Financial support by the Spanish Ministerio de Economía y Competitiv…

Models MolecularMontecarlo Mètode deMonte Carlo method01 natural sciencessupramolecular chemistryMonte Carlo Multiple Minimumlcsh:ChemistryComputational chemistryaza-scorpiandsMolecular rearrangementpH controlled; supramolecular chemistry; synthetic receptors; aza-scorpiands; semi-empirical; Density Functional Theory; Monte Carlo Multiple Minimumlcsh:QH301-705.5semi-empiricalSpectroscopyDensity Functional TheoryDensity functionalsSpatial structureChemistryGeneral MedicineHydrogen-Ion ConcentrationMolecular machineComputer Science ApplicationsMonte Carlo methodpH controlledvisual_artsynthetic receptorsvisual_art.visual_art_mediumDensity functional theoryMonte Carlo MethodMacrocyclic CompoundsSupramolecular chemistry010402 general chemistryQuímica supramolecularCatalysisArticleInorganic ChemistryMetalQuantitative Biology::Subcellular ProcessesPhysical and Theoretical ChemistryMolecular BiologyAza CompoundsFuncional de densitat Teoria del010405 organic chemistryOrganic ChemistryComputational Biology0104 chemical scienceslcsh:Biology (General)lcsh:QD1-999Synthetic ReceptorsQuantum TheorySupramolecular chemistryInternational Journal of Molecular Sciences
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QM/MM calculations of kinetic isotope effects in the chorismate mutase active site.

2003

Kinetic isotope effects have been computed for the Claisen rearrangement of chorismate to prephenate in aqueous solution and in the active site of chorismate mutase from B. subtilus. These included primary 13C and 18O and secondary 3H effects for substitutions at the bond-making and bond-breaking positions. The initial structures of the putative stationary points on the potential energy surface, required for the calculations of isotope effects using the CAMVIB/CAMISO programs, have been selected from hybrid QM/MM molecular dynamical simulations using the DYNAMO program. Refinement of the reactant complex and transition-state structures has been carried out by means of AM1/CHARMM24/TIP3P cal…

Models MolecularProtein ConformationKinetic schemeBiochemistryCatalysisQM/MMIsotopesComputational chemistryKinetic isotope effectComputer SimulationPhysical and Theoretical ChemistryAqueous solutionBinding SitesbiologyChemistryOrganic ChemistryActive siteClaisen rearrangementSolutionsKineticsPotential energy surfacebiology.proteinChorismate mutaseQuantum TheoryThermodynamicsGasesSoftwareBacillus subtilisChorismate MutaseOrganicbiomolecular chemistry
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Chimeric Genomes of Natural Hybrids of Saccharomyces cerevisiae and Saccharomyces kudriavzevii

2009

11 pages, 6 figures.-- PMID: 19251887 [PubMed].-- Printed version published Apr 2009.

Molecular Sequence DataSaccharomyces cerevisiaeNatural hybridsWineSaccharomyces cerevisiaeBiologyApplied Microbiology and BiotechnologySaccharomycesGenomeGenètica molecularSaccharomycesMeiosisaCGHEvolutionary and Genomic MicrobiologyDNA FungalGeneGene RearrangementRecombination GeneticGeneticsComparative Genomic HybridizationEcologyChromosomeqRT-PCRSequence Analysis DNAbiology.organism_classificationAneuploidyDNA FingerprintingChromosome DeletionGenome FungalRestriction fragment length polymorphismSaccharomyces kudriavzeviiRecombination pointsPolymorphism Restriction Fragment LengthSaccharomyces kudriavzeviiFood ScienceBiotechnologyGenome hybridization
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Synthesis of Tetrasubstituted 4,4'-Biimidazoles

2012

Highly substituted 4,4'-biimidazoles were synthesized, in good to excellent yields, through a multicomponent imidazole ring synthesis by using imidazol-4-yl-ethane-1,2-diones as starting materials. The obtained compounds were preliminarily tested as chromogenic and fluorescent sensors for heavy metals.

Molecular StructureChemistryChromogenicOrganic ChemistryImidazolesHeavy metalsSettore CHIM/06 - Chimica Organica44'-Biimidazoles heavy metals sensors Boulton Katritzky Rearrangement imidazolyl-dione pentaphenyl-substituted 44'-2'4''-terimidazoleRing (chemistry)BiochemistryFluorescenceCombinatorial chemistrychemistry.chemical_compoundOrganic chemistryImidazolePhysical and Theoretical Chemistry
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Enantioselective synthesis of fluorinated alpha-amino acids and derivatives in combination with ring-closing metathesis: intramolecular pi-stacking i…

2001

[reaction: see text]. Hydride reduction of C=N bonds stereocontrolled by intramolecular pi-stacking interactions of 1-naphthylsulfinyl and N-aryl groups, nonoxidative Pummerer rearrangement, and ring-closing metathesis are efficiently combined in a highly stereoselective entry to enantiomerically pure cyclic and acyclic fluorinated beta-amino alcohols and alpha-amino acid derivatives, respectively.

Molecular StructureChemistryHydrideStereochemistryPummerer rearrangementOrganic ChemistryStackingEnantioselective synthesisStereoisomerismFluorineMetathesisBiochemistryRing-closing metathesisIntramolecular forcePhysical and Theoretical ChemistryAmino AcidsAcyclic diene metathesisOrganic letters
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Synthesis of 4(5)-phenacyl-imidazoles from isoxazole side-chain rearrangements

2010

A novel base-induced rearrangement of isoxazoles into imidazole derivatives is reported. In the isoxazole series, this represents the first example of a three-atom side-chain rearrangement involving a CNC sequence. The reactions are carried out under nitrogen and produced 2-aryl-4(5)-phenacyl-5(4)-phenyl-imidazoles in high yields. In the presence of oxygen, a cascade rearrangement-oxidation reaction sequence was observed and imidazole derivatives bearing an oxidized side-chain were isolated.

Molecular StructureStereochemistryAcylationOrganic ChemistryImidazolesSequence (biology)Settore CHIM/06 - Chimica OrganicaIsoxazolesPhenacylBiochemistryHeterocyclic rearrangement isoxazole imidazole tandem reactions.Acylationchemistry.chemical_compoundReaction sequencechemistrySide chainImidazoleMoleculeIminesPhysical and Theoretical ChemistryIsoxazoleOxidation-ReductionOrg. Biomol. Chem.
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Synthesis of toxyloxanthone B

2014

A synthesis of the naturally occurring xanthone toxyloxanthone B is described, in which the key step is the regioselective addition of a methyl salicylate to a substituted benzyne, followed by cyclization of the intermediate aryl anion to form the xanthone, the regiochemistry of the aryne addition being confirmed by X-ray crystallography. Subsequent introduction of the pyran ring by [3,3]-rearrangement and deprotection completed the synthesis.

Natural products Xanthones Oxygen heterocycle Benzyne addition Claisen rearrangement.StereochemistryArylOrganic ChemistryRegioselectivitySettore CHIM/06 - Chimica OrganicaRing (chemistry)BiochemistryAryneClaisen rearrangementchemistry.chemical_compoundchemistryPyranDrug DiscoveryXanthone
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Network governance arrangements and rural-urban synergy

2021

Increasing attention has been paid to the importance of balanced rural–urban interaction to sustainable regional development. Yet, our knowledge on the elements of network governance for such interaction is scarce. The aim of this paper is to study what kind of network governance arrangements currently exist, how they can be improved, and whether evolutionary governance paths can be identified. We analyse five existing and evolving cases of functioning rural–urban interaction in European Union (EU) member states, using a network governance framework as an analytical lens. We supplement the governance analysis with examining what kind of spatial understanding or combination of di…

Network governance 3network governanceEnvironmental effects of industries and plantsgovernance arrangementsDesenvolupament ruralTJ807-830WASSGovernance arrangements 2TD194-195Divisions administratives i polítiquesrural-urbanRural SociologyRenewable energy sourcesEnvironmental sciencesRural–urban linkagesrural-urban linkagesRural–urban 1governance arrangements 2rural–urban linkagesDesenvolupament sosteniblerural–urban 1GE1-350network governance 3Rurale Sociologie
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Synthesis of alkaloids by Stevens rearrangement of nitrile-stabilized ammonium ylides: (±)-laudanosine, (±)-laudanidine, (±)-armepavine, (±)-7-methox…

2013

The Stevens rearrangement of nitrile-stabilized ammonium ylides in conjunction with the reductive removal of the nitrile function permits the facile construction of α-branched amines from α-aminonitriles. We employed this reaction sequence for the preparation of (±)-laudanosine, (±)-laudanidine and (±)-armepavine, (±)-7-methoxycryptopleurine, and (±)-xylopinine from two closely related and readily accessible bicyclic α-aminonitriles. The final products were obtained in high to almost quantitative yields (71–98%) from the quaternary ammonium salts obtained by N-alkylation of these starting materials.

NitrileBicyclic moleculeMolecular StructureArmepavineOrganic ChemistryBerberine AlkaloidsStereoisomerismIsoquinolinesBenzylisoquinolinesLaudanosineQuaternary Ammonium Compoundschemistry.chemical_compoundchemistryStevens rearrangement7-methoxycryptopleurineNitrilesXylopinineOrganic chemistryAmmoniumQuinolizinesThe Journal of organic chemistry
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Synthesis of fluorinated 1,2,4-oxadiazin-6-ones through ANRORC rearrangement of 1,2,4-oxadiazoles

2009

Abstract The reaction of 3-ethoxycarbonyl-5-perfluoroalkyl-1,2,4-oxadiazoles with hydroxylamines has been investigated, evidencing the possibility of competitive reaction paths. Nucleophilic addition of hydroxylamine to the electrophilic C(5) of the 1,2,4-oxadiazole ring, followed by ring-opening and ring-closure with enlargement, leads to high yield and in very mild experimental conditions to the formation of 5-hydroxyamino-3-perfluoroalkyl-6 H -1,2,4-oxadiazin-6-ones, one of these presenting water gelation ability. In turn, reactions with N -methylhydroxylamine lead the exclusive formation of 4-perfluoroacylamino-2-methyl-2 H -1,2,5-oxadiazol-3-ones through the well known Boulton–Katritzk…

Nucleophilic additionOrganic ChemistrySettore CHIM/06 - Chimica OrganicaRing (chemistry)BiochemistryMedicinal chemistryTurn (biochemistry)chemistry.chemical_compoundHydroxylaminechemistryYield (chemistry)Drug DiscoveryElectrophileOrganic chemistryOxadiazoles Oxadiazinones ANRORC rearrangement Fluorinated heterocyclesTetrahedron Letters
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