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showing 10 items of 29275 documents

A self-inducible heterologous protein expression system in Escherichia coli

2016

AbstractEscherichia coli is an important experimental, medical and industrial cell factory for recombinant protein production. The inducible lac promoter is one of the most commonly used promoters for heterologous protein expression in E. coli. Isopropyl-β-D-thiogalactoside (IPTG) is currently the most efficient molecular inducer for regulating this promoter’s transcriptional activity. However, limitations have been observed in large-scale and microplate production, including toxicity, cost and culture monitoring. Here, we report the novel SILEX (Self-InducibLe Expression) system, which is a convenient, cost-effective alternative that does not require cell density monitoring or IPTG inducti…

0106 biological sciences0301 basic medicineExpression systemslac operonHeterologousGene ExpressionmechanismLac repressorBiology[ SDV.MP.BAC ] Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriologymedicine.disease_cause01 natural sciencesArticlelaw.inventionApplied microbiologylactose03 medical and health scienceslawlac repressor010608 biotechnologyt1r3 taste receptor[SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry Molecular Biology/Genomics [q-bio.GN]Gene expressionmedicineEscherichia coliFood and NutritionInducerstationary-phaserecombinant geneinducerEscherichia coliMultidisciplinaryhsp70PromoterMolecular biology[SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/BacteriologyRecombinant Proteins030104 developmental biologycloned genesBiochemistry[ SDV.BBM.GTP ] Life Sciences [q-bio]/Biochemistry Molecular Biology/Genomics [q-bio.GN]Alimentation et NutritionRecombinant DNA[SDV.BBM.GTP] Life Sciences [q-bio]/Biochemistry Molecular Biology/Genomics [q-bio.GN]bacteriophage-t7 rna-polymerase[SDV.MP.BAC] Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology
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On the thermodynamic origin of metabolic scaling

2018

The origin and shape of metabolic scaling has been controversial since Kleiber found that basal metabolic rate of animals seemed to vary as a power law of their body mass with exponent 3/4, instead of 2/3, as a surface-to-volume argument predicts. The universality of exponent 3/4 -claimed in terms of the fractal properties of the nutrient network- has recently been challenged according to empirical evidence that observed a wealth of robust exponents deviating from 3/4. Here we present a conceptually simple thermodynamic framework, where the dependence of metabolic rate with body mass emerges from a trade-off between the energy dissipated as heat and the energy efficiently used by the organi…

0106 biological sciences0301 basic medicineFOS: Physical scienceslcsh:Medicine92B05010603 evolutionary biology01 natural sciencesPower lawArticle03 medical and health sciencesFractalPhysics - Biological PhysicsStatistical physicslcsh:ScienceQuantitative Biology - Populations and EvolutionAdditive modelScalingMathematicsMultidisciplinarylcsh:RPopulations and Evolution (q-bio.PE)Universality (dynamical systems)030104 developmental biologyBiological Physics (physics.bio-ph)13. Climate actionFOS: Biological sciencesEctothermBasal metabolic rateExponentlcsh:QScientific Reports
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Opposite trends in the genus Monsonia (Geraniaceae): Specialization in the African deserts and range expansions throughout eastern Africa

2017

The African Austroerate Flora stands out by its important species richness. A distinctive element of this flora is Monsonia (Geraniaceae), mostly found in the Namib-Karoo but also in the Natal-Drakensberg, the Somalian Zambezian and the Saharo-Arabian regions. Here, we reconstruct the evolution and biogeographic history of Monsonia based on nuclear and plastid markers, and examine the role of morphological and niche evolution in its diversification using species distribution modeling and macroevolutionary models. Our results indicate that Monsonia first diversified in the Early Miocene c.21 Ma, coinciding with the start of desertification in southwestern Africa. An important diversification…

0106 biological sciences0301 basic medicineFloraRange (biology)Species distributionBiomelcsh:MedicineBiology010603 evolutionary biology01 natural sciencesArticle03 medical and health sciencesGenusPhotosynthesislcsh:ScienceEcosystemGeraniaceaePhylogenyMultidisciplinaryGeographyEcologylcsh:RBiodiversity030104 developmental biologyTaxonHabitatAfricalcsh:QSpecies richnessDesert ClimateEnergy Metabolism
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Olfactory cues and the value of information: voles interpret cues based on recent predator encounters

2018

Abstract Prey strategically respond to the risk of predation by varying their behavior while balancing the tradeoffs of food and safety. We present here an experiment that tests the way the same indirect cues of predation risk are interpreted by bank voles, Myodes glareolus, as the game changes through exposure to a caged weasel. Using optimal patch use, we asked wild-caught voles to rank the risk they perceived. We measured their response to olfactory cues in the form of weasel bedding, a sham control in the form of rabbit bedding, and an odor-free control. We repeated the interviews in a chronological order to test the change in response, i.e., the changes in the value of the information.…

0106 biological sciences0301 basic medicineForagingZoologyContext (language use)Perceived riskEvolutionary game theoryBiologyPredator-prey interactions010603 evolutionary biology01 natural sciencesPredation03 medical and health sciencesbiology.animalPredatorEcology Evolution Behavior and SystematicsGiving-up densityY-mazebiology.organism_classification030104 developmental biologyOdorAnimal ecologyWeaselAnimal Science and ZoologyVoleOriginal ArticleBehavioral Ecology and Sociobiology
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The Search for Common Origin: Homology Revisited

2018

Understanding the evolution of biodiversity on Earth is a central aim in biology. Currently, various disciplines of science contribute to unravel evolution at all levels of life, from individual organisms to species and higher ranks, using different approaches and specific terminologies. The search for common origin, traditionally called homology, is a connecting paradigm of all studies related to evolution. However, it is not always sufficiently taken into account that defining homology depends on the hierarchical level studied (organism, population, and species), which can cause confusion. Therefore, we propose a framework to define homologies making use of existing terms, which refer to …

0106 biological sciences0301 basic medicineGENESAnalogyPopulationAnalogyBiology010603 evolutionary biology01 natural sciencesHomology (biology)03 medical and health sciencesGeneticsmedicinegenealogyeducationparalogyEcology Evolution Behavior and SystematicsOrganismHOMEOSISConfusioneducation.field_of_studyEvolutionary BiologyScience & TechnologyPhylogenetic treeCHARACTERhomoplasyhomologyClassificationCommon ancestryBiological EvolutionEVOLUTIONcharacter030104 developmental biologyEvolutionary biologyHorizontal gene transfermedicine.symptomorthologyLife Sciences & BiomedicineRegular Articlescommon ancestryDEEP HOMOLOGY
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Ant behaviour and brain gene expression of defending hosts depend on the ecological success of the intruding social parasite.

2019

The geographical mosaic theory of coevolution predicts that species interactions vary between locales. Depending on who leads the coevolutionary arms race, the effectivity of parasite attack or host defence strategies will explain parasite prevalence. Here, we compare behaviour and brain transcriptomes of Temnothorax longispinosus ant workers when defending their nest against an invading social parasite, the slavemaking ant Temnothorax americanus . A full-factorial design allowed us to test whether behaviour and gene expression are linked to parasite pressure on host populations or to the ecological success of parasite populations. Albeit host defences had been shown before to covary with …

0106 biological sciences0301 basic medicineGene ExpressionBiology010603 evolutionary biology01 natural sciencesGeneral Biochemistry Genetics and Molecular BiologyHost-Parasite InteractionsNesting Behavior03 medical and health sciencesEvolutionary arms raceNestParasite hostingAnimalsSocial BehaviorCoevolutionRegulation of gene expressionBrood parasiteEcologyHost (biology)AntsBrainTemnothorax americanusArticlesbiology.organism_classification030104 developmental biologyGeneral Agricultural and Biological SciencesPhilosophical transactions of the Royal Society of London. Series B, Biological sciences
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Very high MHC Class IIB diversity without spatial differentiation in the mediterranean population of greater Flamingos.

2017

WOS: 000397335400001

0106 biological sciences0301 basic medicineGene FlowGenotypeLocal adaptationPopulationGenes MHC Class II010603 evolutionary biology01 natural sciencesIntraspecific competitionGene flowMHC GenesBirds03 medical and health sciences[ SDV.EE.IEO ] Life Sciences [q-bio]/Ecology environment/SymbiosisAnimals[ SDV.IMM ] Life Sciences [q-bio]/Immunology14. Life underwaterSelection GeneticeducationEcology Evolution Behavior and SystematicsAllelic diversity ; Local adaptation ; MHC genes ; Pathogen-mediated balancing selection ; Greater flamingosAllelesLocal adaptationeducation.field_of_studyGenetic diversitybiologyHistocompatibility Antigens Class IIGenetic VariationAllelic diversityMHC genesExonsbiology.organism_classificationPathogen-mediated balancing selection030104 developmental biologyEvolutionary biologyGreater flamingosBiological dispersal[SDV.IMM]Life Sciences [q-bio]/ImmunologyGreater flamingoAdaptation[SDV.EE.IEO]Life Sciences [q-bio]/Ecology environment/SymbiosisResearch Article
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Lipid Nanoparticles as Potential Gene Therapeutic Delivery Systems for Oral Administration.

2017

Background Gene therapy has experimented an increasing attention in the last decades, due to its enormous potential applications in the medical field. It can be defined as the use of genes or genetic material (DNA, RNA, oligonucleotides) to treat or prevent a disease state, generally a geneticbased one. Application Other applications, like treating viral, bacterial or parasite infections or development of vaccines are gaining also interest. Efficient gene therapy is mainly dependent on the ability of the highly labile genetic material to reach the therapeutic target. For this purpose, different delivery systems have been designed and extensively investigated. Nanoparticles offer a broad ran…

0106 biological sciences0301 basic medicineGenetic enhancementAdministration OralComputational biologyBiologyGene deliveryPharmacology01 natural sciences03 medical and health sciencesDrug Delivery SystemsOral administration010608 biotechnologyNucleic AcidsDrug DiscoverySolid lipid nanoparticleGeneticsOral routeAnimalsHumansParasite InfectionsMolecular BiologyGeneGenetics (clinical)Drug CarriersGene Transfer TechniquesGenetic TherapyBiocompatible materialLipids030104 developmental biologyMolecular MedicineNanoparticlesCurrent gene therapy
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Application of high resolution melting assay (HRM) to study temperature-dependent intraspecific competition in a pathogenic bacterium

2017

AbstractStudies on species’ responses to climate change have focused largely on the direct effect of abiotic factors and in particular temperature, neglecting the effects of biotic interactions in determining the outcome of climate change projections. Many microbes rely on strong interference competition; hence the fitness of many pathogenic bacteria could be a function of both their growth properties and intraspecific competition. However, due to technical challenges in distinguishing and tracking individual strains, experimental evidence on intraspecific competition has been limited so far. Here, we developed a robust application of the high-resolution melting (HRM) assay to study head-to…

0106 biological sciences0301 basic medicineGenotypeClimate ChangeScienceintraspecific competitionmedia_common.quotation_subject030106 microbiologyZoologymedicine.disease_causeFlavobacterium010603 evolutionary biology01 natural sciencesArticleCompetition (biology)Intraspecific competitionHigh Resolution Melt03 medical and health sciencesmedicineAnimalsmedia_commonAbiotic componentMultidisciplinarybiologyStrain (chemistry)EcologyQFishesTemperatureRpathogenic bacteriaPathogenic bacteriabiology.organism_classificationhigh-resolution melting (HRM) assay13. Climate actionFlavobacterium columnareMedicinelämpötilaGenetic FitnessBacteriaScientific Reports
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Repeated evolution of camouflage in speciose desert rodents

2017

AbstractThere are two main factors explaining variation among species and the evolution of characters along phylogeny: adaptive change, including phenotypic and genetic responses to selective pressures, and phylogenetic inertia, or the resemblance between species due to shared phylogenetic history. Phenotype-habitat colour match, a classic Darwinian example of the evolution of camouflage (crypsis), offers the opportunity to test the importance of historical versus ecological mechanisms in shaping phenotypes among phylogenetically closely related taxa. To assess it, we investigated fur (phenotypic data) and habitat (remote sensing data) colourations, along with phylogenetic information, in t…

0106 biological sciences0301 basic medicineGenotypeScienceevoluutioZoologyColorBiology010603 evolutionary biology01 natural sciencesArticle03 medical and health sciencesPhylogeneticscamouflageAnimalsAnimal FurEcosystemPhylogenyPhylogenetic inertiaMultidisciplinaryPhylogenetic treeBiological MimicryQRspeciose desert rodents15. Life on landbiology.organism_classificationGerbillusBiological Evolution030104 developmental biologyTaxonPhenotypeHabitatCamouflageCrypsisMedicineGerbillinae
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