Search results for "asm"

showing 10 items of 16598 documents

Fishery-dependent and -independent data lead to consistent estimations of essential habitats

2016

AbstractSpecies mapping is an essential tool for conservation programmes as it provides clear pictures of the distribution of marine resources. However, in fishery ecology, the amount of objective scientific information is limited and data may not always be directly comparable. Information about the distribution of marine species can be derived from two main sources: fishery-independent data (scientific surveys at sea) and fishery-dependent data (collection and sampling by observers in commercial vessels). The aim of this paper is to compare whether these two different sources produce similar, complementary, or different results. We compare them in the specific context of identifying the Es…

0106 biological scienceshttp://aims.fao.org/aos/agrovoc/c_28840Biodiversité et Ecologiehabitatmodélisation spatialehttp://aims.fao.org/aos/agrovoc/c_38371OceanographyGaleus melastomus01 natural sciencesRessource halieutiquehttp://aims.fao.org/aos/agrovoc/c_38127Scyliorhinus caniculamodèle hiérarchiqueSpatial statisticsEcologymodèle de distributionSampling (statistics)Contrast (statistics)Cross-validationModélisation et simulationGeographyHabitatGestion des pêchesModeling and Simulationhttp://aims.fao.org/aos/agrovoc/c_10566http://aims.fao.org/aos/agrovoc/c_3456http://aims.fao.org/aos/agrovoc/c_38117survey designMarine conservationSpecies Distribution ModelsEcology (disciplines)Bayesian probabilityEtmopterus spinaxenquête statistiqueDonnée sur les pêchesmodèle spatiotemporelSede Central IEOContext (language use)Aquatic ScienceDistribution des populationsBayesian hierarchical models010603 evolutionary biologyhttp://aims.fao.org/aos/agrovoc/c_24026elasmobranchsBiodiversity and Ecologyélasmobrancheétude comparativeBayesian hierarchical models;Cross-validation;Species Distribution Models;Spatial statistics;INLA;elasmobranchs ; survey designINLA14. Life underwaterspecies distribution modelsEcology Evolution Behavior and Systematicshttp://aims.fao.org/aos/agrovoc/c_6113collecte des donnéesÉcologie marinehttp://aims.fao.org/aos/agrovoc/c_29788http://aims.fao.org/aos/agrovoc/c_4609010604 marine biology & hydrobiologyGestion et conservation des pêchescross validation[INFO.INFO-MO]Computer Science [cs]/Modeling and Simulationmodèle bayésienFisheryM01 - Pêche et aquaculture - Considérations généraleshttp://aims.fao.org/aos/agrovoc/c_2a75d27eThéorie bayésienneM40 - Écologie aquatiqueSpatial ecologyhttp://aims.fao.org/aos/agrovoc/c_2942[SDE.BE]Environmental Sciences/Biodiversity and Ecologyvalidation croiséeElasmobranchii
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Modelling sensitive elasmobranchs habitat

2013

Basic information on the distribution and habitat preferences of ecologically important species is essential for their management and protection. In the Mediterranean Sea there is increasing concern over elasmobranch species because their biological (ecological) characteristics make them highly vulnerable to fishing pressure. Their removal could affect the structure and function of marine ecosystems, inducing changes in trophic interactions at the community level due to the selective elimination of predators or prey species, competitors and species replacement. In this study Bayesian hierarchical spatial models are used to map the sensitive habitats of the three most caught elasmobranch spe…

0106 biological scienceshttp://aims.fao.org/aos/agrovoc/c_28840Etmopterus spinaxhabitatAquatic ScienceDistribution des populationshttp://aims.fao.org/aos/agrovoc/c_38371OceanographyGaleus melastomus010603 evolutionary biology01 natural sciencesElasmobranch habitatPredationMediterranean seahttp://aims.fao.org/aos/agrovoc/c_38127http://aims.fao.org/aos/agrovoc/c_3041Scyliorhinus caniculaMediterranean SeaVulnerable speciesMarine ecosystem14. Life underwaterhttp://aims.fao.org/aos/agrovoc/c_4699Ecology Evolution Behavior and Systematicshttp://aims.fao.org/aos/agrovoc/c_12399Trophic levelhttp://aims.fao.org/aos/agrovoc/c_6113biologyEcologyU10 - Informatique mathématiques et statistiques010604 marine biology & hydrobiologyScyliorhinus caniculabiology.organism_classificationBiologie marinetechnique de prévisionBayesian hierarchical spatial modelSpecies distribution modelingFisheryHabitatThéorie bayésienneGaleus melastomusM40 - Écologie aquatiquehttp://aims.fao.org/aos/agrovoc/c_10566http://aims.fao.org/aos/agrovoc/c_3456http://aims.fao.org/aos/agrovoc/c_38117Elasmobranchii
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OMICfpp: a fuzzy approach for paired RNA-Seq counts

2019

© The Author(s) 2019.

0106 biological scienceslcsh:QH426-470Pipeline (computing)lcsh:BiotechnologyRNA-SeqBinomial testSample (statistics)Biologyoncología médicaMedical Oncology01 natural sciencesFuzzy logicSet (abstract data type)03 medical and health sciencesUser-Computer InterfaceSoftwarelcsh:TP248.13-248.65GeneticsHumansCàncer030304 developmental biologyOrdered weight average0303 health sciencesbusiness.industrySequence Analysis RNAMethodology ArticleHigh-Throughput Nucleotide SequencingPattern recognitionColorectal cancerlcsh:Genetics3201.01 OncologíatranscriptomaRandomization distributionRNAArtificial intelligenceDNA microarraybusinessColorectal NeoplasmsTranscriptome010606 plant biology & botanyBiotechnology
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Anhydrobiosis: Inside yeast cells

2018

International audience; Under natural conditions yeast cells as well as other microorganisms are regularly subjected to the influence of severe drought, which leads to their serious dehydration. The dry seasons are then changed by rains and there is a restoration of normal water potential inside the cells. To survive such seasonal changes a lot of vegetative microbial cells, which belong to various genera and species, may be able to enter into a state of anhydrobiosis, in which their metabolism is temporarily and reversibly suspended or delayed. This evolutionarily developed adaptation to extreme conditions of the environment is widely used for practical goals - for conservation of microorg…

0106 biological scienceslipid-phaseCell Survivaldesiccation toleranceMicroorganismBiophysicsBioengineeringSaccharomyces cerevisiaeBiology01 natural sciencesApplied Microbiology and BiotechnologyDehydration-rehydrationDesiccation tolerance03 medical and health scienceswine yeastIntracellular protective reactions010608 biotechnology[SDV.IDA]Life Sciences [q-bio]/Food engineeringOrganelle[SPI.GPROC]Engineering Sciences [physics]/Chemical and Process Engineeringwater replacement hypothesisLaboratorium voor PlantenfysiologieDesiccationCryptobiosismembrane phase-transitions030304 developmental biology0303 health sciencesDehydrationWaterendoplasmic-reticulumplasma-membraneAnhydrobiosisYeastYeastDehydration–rehydrationYeast in winemaking[SDV.MP]Life Sciences [q-bio]/Microbiology and ParasitologyBiofysicaCellular MicroenvironmentIntracellular changesBiochemistryglass-transitioncandida-utilis cellsEPSAdaptationDesiccationsaccharomyces-cerevisiae cellsLaboratory of Plant PhysiologyBiotechnologyBiotechnology Advances
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Behavioral responses of Hyalesthes obsoletus to host-plant volatiles cues

2016

The polyphagous planthopper Hyalesthes obsoletus Signoret is considered to be the principal vector of stolbur phytoplasma, which is associated with yellow diseases of grapevine. To explore the possibility of developing novel control strategies, the behavioral responses to six synthetic mixtures and nine single compounds, previously identified from the headspace of Vitex agnus-castus L. (chaste tree) and Urtica dioica L. (nettle), were investigated in Y-tube bioassays. Choice tests revealed differences in the behavioral responses of males and females to the volatiles that they were exposed to. Males were attracted to a mixture containing (E)-β-caryophyllene, 1,8-cineole, (E,E)-α-farnesene, (…

0106 biological sciencesmedia_common.quotation_subjectInsectMethyl benzoate01 natural scienceschemistry.chemical_compoundPlanthopperPhytoplasma vectorPlant volatileBotanyBioassaySemiochemicalUrtica dioicaEcology Evolution Behavior and Systematicsmedia_commonbiologyEcologyVitexSemiochemicalbiology.organism_classificationEcology Evolution Behavior and Systematic010602 entomologySettore AGR/11 - Entomologia Generale E ApplicatachemistryY-tube olfactometerInsect ScienceAgronomy and Crop ScienceMethyl salicylate010606 plant biology & botany
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Soybean and casein hydrolysates induce grapevine immune responses and resistance against Plasmopara viticola

2014

International audience; Plasmopara viticola, the causal agent of grapevine downy mildew, is one of the most devastating grape pathogen in Europe and North America. Although phytochemicals are used to control pathogen infections, the appearance of resistant strains and the concern for possible adverse effects on environment and human health are increasing the search for alternative strategies. In the present investigation, we successfully tested two protein hydrolysates from soybean (soy) and casein (cas) to trigger grapevine resistance against P. viticola. On Vitis vinifera cv. Marselan plants, the application of soy and cas reduced the infected leaf surface by 76 and 63%, as compared to th…

0106 biological sciencesphytoalexins[SDV]Life Sciences [q-bio]Plant ScienceresveratrolResveratrol01 natural sciencesimmune responseinduced resistanceTranscriptomechemistry.chemical_compoundimmunité induiteSoybean hydrolysateOriginal Research ArticlePathogen2. Zero hungerchemistry.chemical_classification0303 health sciencesbiologyPhytoalexinfood and beveragesCasein hydrolysatePlasmopara viticola[SDE]Environmental Sciencesplant immunityrésistance induitelcsh:Plant cultureSoybean hydrolysate; Casein hydrolysate; immune response; grapevine; Plasmopara viticolaHydrolysateMicrobiologyéliciteur de résistance03 medical and health sciencesPlasmopara viticolaImmunityprotein hydrolysatesBotanymildiou de la vigne[SDV.BV]Life Sciences [q-bio]/Vegetal Biologyhydrolysat de protéineprotéine prlcsh:SB1-1110030304 developmental biologyprotein hydrolysates;Plasmopara viticola;Vitis vinifera;induced resistance;plant immunity;phytoalexinsextrait de sojagène de défensehydrolysat de caséinebiology.organism_classificationgrapevinechemistryVitis viniferaDowny mildew010606 plant biology & botany
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Plasma membrane protein trafficking in plant-microbe interactions: a plant cell point of view

2014

International audience; In order to ensure their physiological and cellular functions, plasma membrane (PM) proteins must be properly conveyed from their site of synthesis, i.e., the endoplasmic reticulum, to their final destination, the PM, through the secretory pathway. PM protein homeostasis also relies on recycling and/or degradation, two processes that are initiated by endocytosis. Vesicular membrane trafficking events to and from the PM have been shown to be altered when plant cells are exposed to mutualistic or pathogenic microbes. In this review, we will describe the fine-tune regulation of such alterations, and their consequence in PM protein activity. We will consider the formatio…

0106 biological sciencesplant–microbe interactions[SDV]Life Sciences [q-bio]signaling proteinsplasma membrane;vesicular trafficking;plant-microbe interactions;signaling proteins;sugar transportersReview Articlerécepteur cytoplasmique et nucléairePlant ScienceBiologymembrane plasmiqueSugar transporterslcsh:Plant cultureEndocytosisBioinformaticsplasma membrane01 natural sciencesPlant-Microbe Interactionsvoie secretoire03 medical and health sciences[SDV.BV]Life Sciences [q-bio]/Vegetal Biologylcsh:SB1-1110ReceptorSecretory pathway030304 developmental biologychemistry.chemical_classification0303 health sciencesReactive oxygen speciesphysiologie cellulaire végétaletransport de protéineEndoplasmic reticulumPlant cellTransport proteinCell biologyinteraction protéine membranechemistry[SDE]Environmental Sciencesvesicular traffickingIntracellular010606 plant biology & botanyFrontiers in Plant Science
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Nitric oxide contributes to cadmium toxicity in Arabidopsis by promoting cadmium accumulation in roots and by up-regulating genes related to iron upt…

2009

Abstract Nitric oxide (NO) functions as a cell-signaling molecule in plants. In particular, a role for NO in the regulation of iron homeostasis and in the plant response to toxic metals has been proposed. Here, we investigated the synthesis and the role of NO in plants exposed to cadmium (Cd2+), a nonessential and toxic metal. We demonstrate that Cd2+ induces NO synthesis in roots and leaves of Arabidopsis (Arabidopsis thaliana) seedlings. This production, which is sensitive to NO synthase inhibitors, does not involve nitrate reductase and AtNOA1 but requires IRT1, encoding a major plasma membrane transporter for iron but also Cd2+. By analyzing the incidence of NO scavenging or inhibition …

0106 biological sciencesroots[ SDV.BV ] Life Sciences [q-bio]/Vegetal BiologyPhysiologytoxic metalscadmiumNitrogen assimilationArabidopsischemistry.chemical_elementPlant ScienceNitrate reductase01 natural sciencesNitric oxide03 medical and health scienceschemistry.chemical_compoundArabidopsisGeneticsArabidopsis thaliana[SDV.BV]Life Sciences [q-bio]/Vegetal Biology030304 developmental biologyplasma membrane transporter2. Zero hunger0303 health sciencesCadmiumbiologyAtNOA1ACLNitric oxideMetabolismbiology.organism_classificationNitric oxide synthasechemistryBiochemistrybiology.proteiniron homeostasis010606 plant biology & botany
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Identification and biological traits of a planthopper from the genus Pentastiridius (Hemiptera: Cixiidae) adapted to an annual cropping rotation

2009

International audience; Cixiid planthoppers have been shown to vector phloem-limited prokaryotes associated with plant diseases world-wide. In eastern France, an emerging disease of sugar beet called syndrome basses richesses has been associated with phloem-restricted bacteria transmitted by a cixiid planthopper within the genus Pentastiridius. Early investigation suggested the species being Pentastiridius beieri. On the basis of a morphological and phylogenetic study we report the identification of the planthopper as Pentastiridius leporinus. Furthermore we report some biological traits of the species, which shows a surprising ecological adaptation to an annual cropping rotation sugar beet…

0106 biological sciencesstolbur phytoplasmaSYNDROME DES BASSES RICHESSES[SDV]Life Sciences [q-bio]PENTASIRIDIUS LEPORINUSCIXIIDAE01 natural sciencesHEMIPTERApentastiridius leporinusPlanthopperGenusBotanyPHYTOPLASMEsyndrome basses richessesSYNDROME "BASSES RICHESSES"2. Zero hungerBACTERIE DU PHLOEMEbiologyfungifood and beveragesbiology.organism_classificationCixiidaeHemiptera[SDV] Life Sciences [q-bio]010602 entomologyINSECTEQL1-991STOLBURFULGOROMORPHAAnimal ecologyphloem-restricted bacteriaInsect ScienceVector (epidemiology)insect vectorPENTASTIRIDIUS BEIERI[SDE]Environmental SciencesSugar beetAdaptationINSECTE VECTEURZoology010606 plant biology & botany
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Effect of peracetic acid on levels of geosmin, 2-methylisoborneol, and their potential producers in a recirculating aquaculture system for rearing ra…

2019

Abstract In recirculating aquaculture systems (RAS)s, off-flavors and odors, mainly caused by geosmin (GSM) and 2-methylisoborneol (MIB), can accumulate in the flesh of fish from RAS water, reducing the profitability of production. In this study, peracetic acid (PAA) was applied in three application intervals to pump sumps of rainbow trout (Oncorhynchus mykiss) reared in RAS. Using a real-time polymerase chain reaction (qPCR), the potential off-flavor producers were quantified using geoA and MIB synthase genes. Streptomyces was identified as the major GSM producer, and biofilters showed the highest number of potential off-flavor producers. Concentrations of GSM and MIB were analyzed in the …

0106 biological sciencesta1172GeoAAquatic ScienceMIB synthase01 natural scienceschemistry.chemical_compoundAquaculturekirjolohiPeracetic acidFood sciencevesiviljely (kalatalous)neoplasmsoff-flavorsbusiness.industry010604 marine biology & hydrobiologylohikalatrecirculating aquaculture sytemfood and beveragesFish filletRecirculating aquaculture system04 agricultural and veterinary sciencesrainbow troutGeosmindigestive system diseaseschemistryBiofilter040102 fisheries0401 agriculture forestry and fisheries2-MethylisoborneolRainbow troutmaku (aineen ominaisuudet)businessAquacultural Engineering
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