Search results for "bacteri"

Abundance of narG, napA, nirK and nosZ genes of denitrifying bacteria in a Norway spruce forest under different N-deposition

2007

Use of fonctional genes to quantify denitrifiers in the environment

2006

 ; During the last decade, application of molecular methods using cultivation-independent approaches has provided new insights into the composition and structure of denitrifying communities in various environments. However, little is known about their abundance, and quantification is still performed using cultivation-based approaches, which are not only biased by the inability to cultivate of many micro-organisms but also fastidious and time-consuming. Two types of cultivation-independent approaches have recently been developed to quantify denitrifiers. The first type, which is based on the hybridization technique, comprises the use of Southern hybridization and DNA arrays. The second type,…

Characterization of the role of flagellin in the innate immunity triggered by the endophytic pgpr burkholderia phytofirmans in arabidopsis and grapev…

2014

International audience

Etude comparative de deux méthodes de transformation et de deux milieux de culture chez Agrobacterium tumefaciens souche LBA4404

2013

Rapport de stage de master 1 BAP GEAPSI

Dispersal potential of antibiotrophy along the manure-soil-sediment continuum of sulfamethazine-contaminated agrosystems

2021

An emerging function in the scientific literature, antibiotrophy is the bacterial capacity to metabolize antibiotics. Considered a bioremediation tool, it remains a health risk due to its association with antibiotic resistance. The first goal of this thesis was to study its dispersion within agrosystems contaminated with antibiotics during two coalescence events, i.e. manure spreading on the soil and its erosion towards the aquatic compartment. Experiments have shown the systematic invasion of the soil and sediment bacterial communities by the antibiotroph Microbacterium sp. C448 when sulfamethazine is present but not necessarily mineralized. The antibiotic would have a double function towa…

Influence du système de sécrétion de type III bactérien dans les intéractions plantes-Pseudomonas spp. fluorescents non pathogènes

2012

http://prodinra.inra.fr/record/271693SPEEAEcolDurCT3; L’objectif de cette thèse a été de contribuer à faire progresser les connaissances sur les interactions bénéfiques entre les plantes et les microorganismes en évaluant la contribution des systèmes de sécrétion de type III (SST3). Une synthèse des connaissances disponibles relatives aux SST3 chez les Pseudomonas non pathogènes, saprotrophes ou mutualistes, montre que les SST3 ne sont pas cantonnés aux interactions parasites ou pathogènes avec les plantes. Dans la première étude expérimentale, nous avons utilisé différents génotypes de Medicago truncatula Gaertn. cv. Jemalong capables (Myc+) ou non (Myc-) d’établir une symbiose mycorhizien…

A core microbiota of plant and earthworm interaction? Phylogenetic and functional aspects

2017

International audience; The core microbiota concept has been proposed to describe the subset of a microbiota (e.g. the rhizosphere microbial community) associated with a given host (e.g. a plant) going beyond macroenvironment differences (e.g. soil type), and characterized by taxonomic markers (e.g. 16S rRNA gene sequences). Its existence has been questioned by geographical studies, showing the overruling soil type effect in shaping microbial communities. As far as biotic determinants are concerned, several “hosts” or macroorganisms are impacting a given habitat and its specific microbial community. In soils, there is an overlap between the so-called rhizosphere and the drilosphere, defined…

Contrasting Spatial Patterns and Ecological Attributes of Soil Bacterial Taxa across French National Territory

2017

EA SPE BIOME GENOSOL UB UB Agrosup EA SPE BIOME GENOSOL UB UB AgrosupEASPEBIOMEGENOSOLUB UB Agrosup; Even though recent studies have clarified the influence of environmental filters on bacterial community diversity, those constraining bacterial populations variations remain unclear. In consequence, our ability to understand the ecological attributes of soil bacteria and to predict microbial community response to environmental stress is therefore limited. Here, we characterized the bacterial community composition and the various bacterial taxonomic groups constituting the community across the French country, by using a 16x16 km systematic grid representing 1825 sites to precisely decipher th…

Response of soil bacterial and hppd communities to tembotrione herbicide

2022

Herbicides used in agriculture aim to prevent weed growth but are known to end up in contactwith soil microorganisms, thus defined as non-target organisms. Tembotrione, a recentlymarketed β-triketone herbicide, is known to inhibit the 4-HydroxyPhenylPyruvateDioxygenase(4-HPPD) in weeds. This enzyme is also found in numerous soil microorganisms, such as somePGPR and symbiotic bacteria, that play a key role in maintenance of ecosystem services.In this study, one of the major concerns is to assess whether tembotrione could have toxiceffects on soil microorganisms and could disturb soil microbial community dynamic andstructure. To investigate the possible impacts of this herbicide on these comm…

Services provided by soil microorganisms to improve plant phosphate nutrition

2022

Since the first Green Revolution, agricultural practices have been based on the massive use of synthetic fertilisers and plant protection products. Since then, global consumption of phosphate fertilisers has more than tripled, reaching 47 million tonnes in 2019. Current projections estimate that phosphate rock stocks (natural phosphorus resources for fertiliser production) could be depleted within the next century, leading us to change our agricultural practices. In soils, P is mainly present in complexed forms that are not easily accessible to plants. To reduce the use of phosphate fertilisers, it is necessary to make this complexed phosphate accessible to plants. This can be done by benef…