Search results for "biophysics"

showing 10 items of 3515 documents

Spectral hole burning study of protoporphyrin IX substituted myoglobin.

1992

Protoporphyrin IX substituted myoglobin reveals excellent hole burning properties. We investigated the frequency shift of persistent spectral holes under isotropic pressure conditions in a range from 0 to 2.4 MPa. In this range, the protein behaves like an elastic solid. The shift of the holes under pressure shows a remarkable frequency dependence from which the compressibility of the protein can be determined. The compressibility, in turn, allows for an estimation of the equilibrium volume fluctuations. Within the frame of the model used to interpret the pressure data, it is possible to determine the absorption frequency of the isolated chromophore and the associated solvent shift in the p…

Quantitative Biology::BiomoleculesProtoporphyrin IXMyoglobinPhotochemistryProtein ConformationAnalytical chemistryFluorescence spectrometryBiophysicsProtoporphyrinsChromophorechemistry.chemical_compoundSpectrometry FluorescencechemistryMyoglobinSpectral hole burningCompressibilityAnimalsProtoporphyrinHorsesCompressibility factorResearch ArticleBiophysical journal
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Effect of overground vs treadmill running on plantar pressure: Influence of fatigue

2013

Abstract The differences produced when running on a treadmill vs overground may call into question the use and validity of the treadmill as a piece of equipment commonly used in research, training, and rehabilitation. The aim of the present study was to analyze under pre/post fatigue conditions the effect of treadmill vs overground on plantar pressures. Twenty-seven recreational runners (17 men and 10 women) ran on a treadmill and overground at two speeds: S 1  = 3.33 m/s and S 2  = 4.00 m/s, before and after a fatigue protocol consisting of a 30-min run at 85% of their individual maximal aerobic speed (MAS). Contact time (CT in seconds), peak pressure (PP in kPa), and relative load (RL in …

AdultMalemedicine.medical_specialtyHeelContact timeBiophysicsSTRIDEPhysical exerciseRunningTreadmill runningPressuremedicineHumansOrthopedics and Sports MedicineTreadmillFatigueFootbusiness.industryPlantar pressureRehabilitationRepeated measures designBiomechanical PhenomenaMetatarsusmedicine.anatomical_structurePhysical therapyFemaleHeelbusinessGait & Posture
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Sorbitol-penetration enhancer containing vesicles loaded with baicalin for the protection and regeneration of skin injured by oxidative stress and UV…

2018

Abstract Aiming at improving the protective effects of baicalin on the skin, new highly-biocompatible penetration enhancer containing vesicles (PEVs) were developed by modifying the base formulation of transfersomes with sorbitol, thus obtaining sorbitol-PEVs. An extensive evaluation of the physico-chemical features of both transfersomes and sorbitol-PEVs was carried out. Transfersomes were mainly close-packed, multi-compartment vesicles, while sorbitol-PEVs appeared mostly as single, spherical, unilamellar vesicles. All the vesicles were small in size (∼128 nm) and negatively charged (∼−67 mV), without significant differences between the formulations. The in vitro delivery of baicalin to i…

SwineUltraviolet RaysChemistry PharmaceuticalCellPharmaceutical Science02 engineering and technologymedicine.disease_cause030226 pharmacology & pharmacyCell LineExcipients03 medical and health scienceschemistry.chemical_compoundMice0302 clinical medicineDrug Delivery SystemsCell MovementmedicineAnimalsHumansRegenerationSorbitolParticle SizeCell ProliferationSkinFlavonoidsWound HealingCell growthVesicleRegeneration (biology)fungi3T3 Cells021001 nanoscience & nanotechnologyIn vitroOxidative Stressmedicine.anatomical_structurechemistryBiophysicsSorbitol0210 nano-technologyBaicalinOxidative stressInternational journal of pharmaceutics
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Ligation Tunes Protein Reactivity in an Ancient Haemoglobin: Kinetic Evidence for an Allosteric Mechanism in Methanosarcina acetivorans Protoglobin

2012

Abstract: Protoglobin from Methanosarcina acetivorans (MaPgb) is a dimeric globin with peculiar structural properties such as a completely buried haem and two orthogonal tunnels connecting the distal cavity to the solvent. CO binding to and dissociation from MaPgb occur through a biphasic kinetics. We show that the heterogenous kinetics arises from binding to (and dissociation from) two tertiary conformations in ligation-dependent equilibrium. Ligation favours the species with high binding rate (and low dissociation rate). The equilibrium is shifted towards the species with low binding (and high dissociation) rates for the unliganded molecules. A quantitative model is proposed to describe t…

HEME ENVIRONMENTStereochemistrySILICA-GELSArchaeal ProteinsAllosteric regulationKineticsBiophysicslcsh:MedicinePlasma protein bindingBiochemistryDissociation (chemistry)HemoglobinsAllosteric RegulationBINDINGINTERNAL HYDROPHOBIC CAVITIESMoleculeGlobinFerrous CompoundsMethanosarcina acetivoransSettore BIO/10lcsh:ScienceBiologyT STATE HEMOGLOBINCarbon MonoxideMultidisciplinaryPhotolysisbiologyChemistryPhysicslcsh:RProteinsMethanosarcinabiology.organism_classificationRecombinant ProteinsEnzymesGlobinsKineticsOXYGEN-AFFINITYBiochemistryMethanosarcinaARABIDOPSIS-THALIANAlcsh:QGLOBIN-COUPLED SENSORSHuman medicineProtein MultimerizationLIGAND MIGRATIONNEUROGLOBINResearch ArticleProtein Binding
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Cellular stress induces cap-independent alpha-enolase/MBP-1 translation.

2015

AbstractMyc promoter-binding protein-1 (MBP-1) is a shorter protein variant of the glycolytic enzyme alpha-enolase. Although several lines of evidence indicate that MBP-1 acts as a tumor suppressor, the cellular mechanisms and signaling pathways underlying MBP-1 expression still remain largely elusive. To dissect these pathways, we used the SkBr3 breast cancer cell line and non-tumorigenic HEK293T cells ectopically overexpressing alpha-enolase/MBP-1. Here, we demonstrate that induced cell stresses promote MBP-1 expression through the AKT/PERK/eIF2α signaling axis. Our results contribute to shedding light on the molecular mechanisms underlying MBP-1 expression in non-tumorigenic and cancer c…

Alpha-enolaseCellEukaryotic Initiation Factor-2Alternative translationBiochemistryeIF-2 KinaseBreast cancerHEK293 CellStructural BiologyProtein IsoformsbiologyMedicine (all)Translation (biology)Recombinant ProteinEndoplasmic Reticulum StressRecombinant ProteinsNeoplasm ProteinsDNA-Binding ProteinsGene Expression Regulation Neoplasticmedicine.anatomical_structureFemaleSignal transductionMyc promoter-binding protein-1Breast NeoplasmHumanSignal TransductionCell SurvivalDNA-Binding ProteinRecombinant Fusion ProteinsBiophysicsBreast NeoplasmsNeoplasm ProteinGeneticCell Line TumorEndoplasmic reticulum streGeneticsmedicineBiomarkers TumorHumansGene SilencingMolecular BiologyProtein kinase BTumor Suppressor ProteinTumor Suppressor ProteinsHEK 293 cellsProtein IsoformCell BiologySettore BIO/18 - GeneticaHEK293 CellsBiophysicGene Expression RegulationPhosphopyruvate HydrataseCancer cellbiology.proteinUnfolded protein responseCancer researchProto-Oncogene Proteins c-aktRecombinant Fusion ProteinFEBS letters
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More than a pore: How voltage-gated calcium channels act on different levels of neuronal communication regulation.

2021

ABSTRACT Voltage-gated calcium channels (VGCCs) represent key regulators of the calcium influx through the plasma membrane of excitable cells, like neurons. Activated by the depolarization of the membrane, the opening of VGCCs induces very transient and local changes in the intracellular calcium concentration, known as calcium nanodomains, that in turn trigger calcium-dependent signaling cascades and the release of chemical neurotransmitters. Based on their central importance as concierges of excitation-secretion coupling and therefore neuronal communication, VGCCs have been studied in multiple aspects of neuronal function and malfunction. However, studies on molecular interaction partners …

0301 basic medicineα2δ subunitsBiophysicschemistry.chemical_elementReviewNeurotransmissionCalciumBiochemistrySynaptic TransmissionCalcium in biology03 medical and health sciencesvoltage-induced calcium releasealternative splicing0302 clinical medicinevoltage-gated calcium channelsCavβ subunitsVGCC auxiliary subunitsCalcium SignalingIon channelNeuronssynaptogenesisVoltage-dependent calcium channelChemistryRyanodine receptorDepolarization030104 developmental biologyIon channelsCalciumgene regulationNeuroscience030217 neurology & neurosurgeryIntracellularResearch ArticleChannels (Austin, Tex.)
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Amphiphilic peptide-tagged N-cadherin forms radial glial-like fibers that enhance neuronal migration in injured brain and promote sensorimotor recove…

2023

The mammalian brain has very limited ability to regenerate lost neurons and recover function after injury. Promoting the migration of young neurons (neuroblasts) derived from endogenous neural stem cells using biomaterials is a new and promising approach to aid recovery of the brain after injury. However, the delivery of sufficient neuroblasts to distant injured sites is a major challenge because of the limited number of scaffold cells that are available to guide neuroblast migration. To address this issue, we have developed an amphiphilic peptide [(RADA)3-(RADG)] (mRADA)-tagged N-cadherin extracellular domain (Ncad-mRADA), which can remain in mRADA hydrogels and be injected into deep brain…

BiomaterialsMechanics of MaterialsBiophysicsCeramics and CompositesNeurociènciesBioengineeringPèptidsCervell Ferides i lesions
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Electrostatic Tuning of the Ligand Binding Mechanism by Glu27 in Nitrophorin 7

2018

AbstractNitrophorins (NP) 1–7 are NO-carrying heme proteins found in the saliva of the blood-sucking insect Rhodnius prolixus. The isoform NP7 displays peculiar properties, such as an abnormally high isoelectric point, the ability to bind negatively charged membranes, and a strong pH sensitivity of NO affinity. A unique trait of NP7 is the presence of Glu in position 27, which is occupied by Val in other NPs. Glu27 appears to be important for tuning the heme properties, but its influence on the pH-dependent NO release mechanism, which is assisted by a conformational change in the AB loop, remains unexplored. Here, in order to gain insight into the functional role of Glu27, we examine the ef…

Models Molecular0301 basic medicineConformational changeProtein ConformationMolecular biologylcsh:MedicineSangCrystallography X-RayLigands01 natural scienceschemistry.chemical_compoundProtein structureModelsZoologiaBloodsucking insectsNitrophorinStatic electricitylcsh:ScienceHemeCell receptorschemistry.chemical_classificationCrystallographyMultidisciplinaryParasitologiaAmino acidBloodRhodniusInsect ProteinsAnimals; Crystallography X-Ray; Glutamic Acid; Heme; Hemeproteins; Insect Proteins; Ligands; Models Molecular; Molecular Dynamics Simulation; Mutation; Protein Conformation; Rhodnius; Salivary Proteins and Peptides; Static ElectricityHemeproteinsHemeproteinStatic ElectricityGlutamic AcidHemeMolecular Dynamics Simulation010402 general chemistryArticle03 medical and health sciencesAnimalsSalivary Proteins and PeptidesBiologia molecularInsectes hematòfags030102 biochemistry & molecular biologylcsh:RMolecular0104 chemical sciencesIsoelectric pointchemistryMutationX-RayBiophysicslcsh:QReceptors cel·lularsParasitologyZoologyScientific Reports
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Is “I-DNA” derived from Nuclear DNA ?

1970

On the basis of double radioactive labelling and buoyant density studies, it is concluded that “I-DNA” is not a separate entity from nuclear DNA but may be an artefact derived from it.

chemistry.chemical_compoundMultidisciplinaryChemistryLabellingBiophysicsBuoyant densitysense organsDNArespiratory tract diseasesNuclear DNANature
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Phenol compounds as new materials for electron spin resonance dosimetry in radiotherapy

2016

Materials sciencemedicine.medical_treatmentBiophysicsGeneral Physics and AstronomyNew materialsGeneral Medicinelaw.inventionRadiation therapychemistry.chemical_compoundNuclear magnetic resonancechemistrylawmedicinePhenolDosimetryRadiology Nuclear Medicine and imagingElectron paramagnetic resonancePhysica Medica
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