Search results for "buchnera"

showing 10 items of 61 documents

Comparative Genomics of Serratia spp.: Two Paths towards Endosymbiotic Life

2012

Symbiosis is a widespread phenomenon in nature, in which insects show a great number of these associations. Buchnera aphidicola, the obligate endosymbiont of aphids, coexists in some species with another intracellular bacterium, Serratia symbiotica. Of particular interest is the case of the cedar aphid Cinara cedri, where B. aphidicola BCc and S. symbiotica SCc need each other to fulfil their symbiotic role with the insect. Moreover, various features seem to indicate that S. symbiotica SCc is closer to an obligate endosymbiont than to other facultative S. symbiotica, such as the one described for the aphid Acirthosyphon pisum (S. symbiotica SAp). This work is based on the comparative genomi…

Genome evolutionEvolutionary ProcessesSerratialcsh:MedicineGenomicsBiologyForms of EvolutionGenomeMicrobiologyEvolution Molecular03 medical and health sciencesBuchneraPhylogeneticsAnimalslcsh:ScienceSymbiosisGenome sizeBiologyGenome EvolutionPhylogeny030304 developmental biologyGeneticsComparative genomics0303 health sciencesEvolutionary BiologyMultidisciplinaryObligate030306 microbiologylcsh:RComputational BiologyGenomicsComparative Genomicsbiology.organism_classificationAphidsMicrobial Evolutionlcsh:QBuchneraGenome BacterialResearch ArticleCoevolutionPLoS ONE
researchProduct

The evolution of the heat-shock protein GroEL from Buchnera, the primary endosymbiont of aphids, is governed by positive selection

2002

The heat-shock protein GroEL is a double-ring-structured chaperonin that assists the folding of many newly synthesized proteins in Escherichia coli and the refolding in vitro, with the cochaperonin GroES, of conformationally damaged proteins. This protein is constitutively overexpressed in the primary symbiotic bacteria of many insects, constituting approximately 10% of the total protein in Buchnera, the primary endosymbiont of aphids. In the present study, we perform a maximum likelihood (ML) analysis to unveil the selective constraints in GroEL. In addition, we apply a new statistical approach to determine the patterns of evolution in this highly interesting protein. The main conclusion d…

In Vitro Techniquesmedicine.disease_causePolymerase Chain ReactionChaperoninEvolution MolecularBuchneraHeat shock proteinOperonEscherichia coliGeneticsmedicineAnimalsCell LineageSelection GeneticSymbiosisMolecular BiologyEscherichia coliPhylogenyEcology Evolution Behavior and SystematicsDNA PrimersGeneticsbiologyPhylogenetic treeChaperonin 60GroESbiochemical phenomena metabolism and nutritionbiology.organism_classificationGroELAmino Acid SubstitutionAphidsbacteriaBuchneraSymbiotic bacteria
researchProduct

Genome interdependence in insect-bacterium symbioses

2001

Symbioses between unicellular and multicellular organisms have contributed significantly to the evolution of life on Earth. As exemplified by several studies of bacterium-insect symbioses, modern genomic techniques are providing exciting new information about the molecular basis and the biological roles of these complex relationships, revealing for instance that symbionts have lost many genes for functions that are provided by the host, but that they can provide amino acids that the host cannot synthesize.

InsectaBuchnerafungiAnimalsMinireviewBacterial Physiological PhenomenaSymbiosisModels BiologicalGenome BacterialPhylogenyHost-Parasite InteractionsOligonucleotide Array Sequence Analysis
researchProduct

Structure and evolution of the leucine plasmids carried by the endosymbiont (Buchnera aphidicola) from aphids of the family Aphididae.

1998

In all examined species of the family Aphididae, the bacterial endosymbiont Buchnera aphidicola carries a plasmid encoding the genes leuABCD (involved in leucine biosynthesis) along with repA1, repA2 and ORF1. The gene organisation of the leucine plasmids was conserved, except in Buchnera isolated from Pterocomma populeum, where ORF1 was located in a different position. An inverted repeat (LIR1) located between repA2 and leuA is found in all of the Buchnera leucine plasmids examined. The predicted secondary structure of the LIR1 transcript conforms to a long hairpin loop, suggesting an involvement in transcription termination or messenger stability. Phylogenetic reconstruction based on repA…

Inverted repeatMolecular Sequence DataSequence alignmentBiologyMicrobiologyOpen Reading FramesPlasmidEnterobacteriaceaeLeucineGeneticsAnimalsAmino Acid SequenceRNA MessengerSymbiosisMolecular BiologyGenePhylogenyRepetitive Sequences Nucleic AcidGeneticsBase SequenceChromosome MappingGene Expression Regulation Bacterialbiochemical phenomena metabolism and nutritionbiology.organism_classificationOpen reading frameRNA BacterialGenes BacterialAphidsHorizontal gene transferNucleic Acid ConformationLeucineBuchneraSequence AlignmentPlasmidsFEMS microbiology letters
researchProduct

Genomic determinants of protein folding thermodynamics in prokaryotic organisms.

2004

Here we investigate how thermodynamic properties of orthologous proteins are influenced by the genomic environment in which they evolve. We performed a comparative computational study of 21 protein families in 73 prokaryotic species and obtained the following main results. (i) Protein stability with respect to the unfolded state and with respect to misfolding are anticorrelated. There appears to be a trade-off between these two properties, which cannot be optimized simultaneously. (ii) Folding thermodynamic parameters are strongly correlated with two genomic features, genome size and G+C composition. In particular, the normalized energy gap, an indicator of folding efficiency in statistical…

Models MolecularProtein DenaturationProtein FoldingProtein familyArchaeal ProteinsThermodynamicsdeleterious mutationsthermophilic proteinsBiologymonte-carlo algorithmGenomeNegative selectionBacterial ProteinsStructural BiologyMolecular evolutionGenome ArchaealevolutionbuchneraMolecular BiologyGenome sizeGeneticsPrincipal Component Analysisacid side-chainsBacteriaSequence Homology Amino Acidreplica approachComputational BiologystabilityGenetic codeArchaeaPRI BioscienceFolding (chemistry)endosymbiotic bacteriacation-pi interactionsThermodynamicsProtein foldingHydrophobic and Hydrophilic InteractionsGenome BacterialJournal of molecular biology
researchProduct

The Striking Case of Tryptophan Provision in the Cedar Aphid Cinara cedri

2008

ABSTRACT Buchnera aphidicola BCc has lost its symbiotic role as the tryptophan supplier to the aphid Cinara cedri . We report the presence of a plasmid in this endosymbiont that contains the trpEG genes. The remaining genes for the pathway ( trpDCBA ) are located on the chromosome of the secondary endosymbiont “ Candidatus Serratia symbiotica.” Thus, we propose that a symbiotic consortium is necessary to provide tryptophan.

Molecular Sequence DataGenetics and Molecular BiologyMicrobiologySerratiaMicrobiologyPlasmidBuchneraSymbiosisAnimalsSymbiosisMolecular BiologyGeneIn Situ HybridizationAphidModels GeneticbiologyfungiTryptophanTryptophanbiochemical phenomena metabolism and nutritionbiology.organism_classificationGenes BacterialAphidsCandidatusbacteriaBuchneraPlasmidsJournal of Bacteriology
researchProduct

Side-stepping secondary symbionts: widespread horizontal transfer across and beyond the Aphidoidea.

2003

To elucidate the co-evolutionary relationships between phloem-feeding insects and their secondary, or facultative, bacterial symbionts, we explore the distributions of three such microbes--provisionally named the R-type (or PASS, or S-sym), T-type (or PABS), and U-type--across a number of aphid and psyllid hosts through the use of diagnostic molecular screening techniques and DNA sequencing. Although typically maternally transmitted, phylogenetic and pairwise divergence analyses reveal that these bacteria have been independently acquired by a variety of unrelated insect hosts, indicating that horizontal transfer has helped to shape their distributions. Based on the high genetic similarity b…

Molecular Sequence DataHamiltonella defensaDNA RibosomalHemipteraPhylogeneticsGeneticsAnimalsSymbiosisEcology Evolution Behavior and SystematicsPhylogenyDNA PrimersAphidFacultativebiologyPhylogenetic treeBase SequenceEcologyfungifood and beveragesGenetic Variationbiochemical phenomena metabolism and nutritionbiology.organism_classificationEvolutionary biologyAphidsHorizontal gene transferEvolutionary ecologyBuchneraGammaproteobacteriaMolecular ecology
researchProduct

Plasmid-encoded anthranilate synthase (TrpEG) in Buchnera aphidicola from aphids of the family pemphigidae

1999

Aphids are dependent on an intracellular symbiont (Buchnera aphidicola, Proteobacteria) for normal growth and reproduction (7, 19, 45). The bacteria reside in specialized cells in the aphid hemocele and are transmitted maternally through infection of eggs or embryos (11, 26). Phylogenetic studies have revealed two major characteristics of the evolutionary history of the association (37, 39); (i) the symbiosis had a single origin, dated about 150 million to 250 million years ago; and (ii) host and symbiont lineages have since diverged strictly in parallel. The association, like other symbioses in insects feeding on restricted and unbalanced diets, is thought to have a nutritional basis (5–7,…

Molecular Sequence DataPemphigus spyrothecaePolymerase Chain ReactionApplied Microbiology and BiotechnologyEvolution MolecularPlasmidPhylogeneticsInvertebrate MicrobiologyAnimalsAmino Acid SequenceRepliconCloning MolecularSymbiosisPhylogenyAnthranilate SynthaseDNA PrimersGeneticsAphidBacteriaBase SequenceSequence Homology Amino AcidEcologybiologyfood and beveragesAphididaebiochemical phenomena metabolism and nutritionPhysical Chromosome Mappingbiology.organism_classificationBiochemistryAphidsbiology.proteinAnthranilate synthaseBuchneraPlasmidsFood ScienceBiotechnology
researchProduct

Putative evolutionary origin of plasmids carrying the genes involved in leucine biosynthesis in Buchnera aphidicola (endosymbiont of aphids)

1997

An 8.5-kb plasmid encoding genes (leuABCD) involved in leucine biosynthesis and a small plasmid of 1.74 kb of yet unknown function were found in the intracellular symbiont, Buchnera aphidicola, of two divergent aphid species, Thelaxes suberi and Tetraneura caerulescens, respectively. The leuABCD-carrying plasmid (pBTs1) was amplified from total aphid DNA by inverse long PCR, using outwardly oriented oligonucleotide primers specific to leuA. The resulting 8.2-kb PCR fragment as well as the 1.74-kb plasmid (pBTc1) were cloned and sequenced. pBTs1 differed from a previously described B. aphidicola plasmid (pRPE) of the aphid Rhopalosiphum padi by the presence of a small heat shock gene (ibp) a…

Molecular Sequence DataReplication OriginRegulatory Sequences Nucleic AcidMicrobiologyDNA RibosomalEvolution MolecularOpen Reading FramesPlasmidPhylogeneticsLeucineGram-Negative BacteriaAnimalsRepliconAmino Acid SequenceMolecular BiologyGenePhylogenyGeneticsbiologyBase SequenceSequence Homology Amino AcidNucleic acid sequenceRibosomal RNAbiology.organism_classificationOpen reading frameGenes BacterialAphidsBuchneraPlasmidsResearch Article
researchProduct

2001

Symbioses between unicellular and multicellular organisms have contributed significantly to the evolution of life on Earth. As exemplified by several studies of bacterium-insect symbioses, modern genomic techniques are providing exciting new information about the molecular basis and the biological roles of these complex relationships, revealing for instance that symbionts have lost many genes for functions that are provided by the host, but that they can provide amino acids that the host cannot synthesize.

Multicellular organismbiologySymbiosisEvolutionary biologyPhylogeneticsHost (biology)fungiDNA microarrayBuchnerabiology.organism_classificationGeneGenomeGenome Biology
researchProduct