Search results for "canopy"
showing 10 items of 221 documents
Status of vulnerable Cystoseira populations along the Italian infralittoral fringe, and relationships with environmental and anthropogenic variables
2018
We analyzed the occurrence and status of infralittoral fringe populations of Cystoseira spp. (Fucales) at thirteen rocky sites around the Italian coastline, and explored the relationships with relevant environmental and anthropogenic variables. We found Cystoseira populations at 11 sites: most were scattered and comprised monospecific stands of C. compressa, and only 6 sites also supported sparse specimens of either C. amentacea var. stricta or C. brachycarpa. Coastal human population density, Chlorophyll a seawater concentrations, sea surface temperature, annual range of sea surface temperature and wave fetch explained most of the variation of the status of C. compressa. We hypothesize a g…
A field study on solar-induced chlorophyll fluorescence and pigment parameters along a vertical canopy gradient of four tree species in an urban envi…
2013
Abstract: To better understand the potential uses of vegetation indices based on the sun-induced upward and downward chlorophyll fluorescence at leaf and at canopy scales, a field study was carried out in the city of Valencia (Spain). Fluorescence yield (FY) indices were derived for trees at different traffic intensity locations and at three canopy heights. This allowed investigating within-tree and between-tree variations of FY indices for four tree species. Several FY indices showed a significant (p < 0.05) and important effect of tree location for the species Morus alba (white mulberry) and Phoenix canariensis (Canary Island date palm). The upward FY parameters of M. alba, and the upward…
SMART: Unique splitting-while-merging framework for gene clustering
2014
© 2014 Fa et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Successful clustering algorithms are highly dependent on parameter settings. The clustering performance degrades significantly unless parameters are properly set, and yet, it is difficult to set these parameters a priori. To address this issue, in this paper, we propose a unique splitting-while-merging clustering framework, named "splitting merging awareness tactics" (SMART), which does not require any a priori knowledge of either the number …
Data Analysis and Bioinformatics
2007
Data analysis methods and techniques are revisited in the case of biological data sets. Particular emphasis is given to clustering and mining issues. Clustering is still a subject of active research in several fields such as statistics, pattern recognition, and machine learning. Data mining adds to clustering the complications of very large data-sets with many attributes of different types. And this is a typical situation in biology. Some cases studies are also described.
Structural clustering of millions of molecular graphs
2014
We propose an algorithm for clustering very large molecular graph databases according to scaffolds (i.e., large structural overlaps) that are common between cluster members. Our approach first partitions the original dataset into several smaller datasets using a greedy clustering approach named APreClus based on dynamic seed clustering. APreClus is an online and instance incremental clustering algorithm delaying the final cluster assignment of an instance until one of the so-called pending clusters the instance belongs to has reached significant size and is converted to a fixed cluster. Once a cluster is fixed, APreClus recalculates the cluster centers, which are used as representatives for…
Incrementally Assessing Cluster Tendencies with a~Maximum Variance Cluster Algorithm
2003
A straightforward and efficient way to discover clustering tendencies in data using a recently proposed Maximum Variance Clustering algorithm is proposed. The approach shares the benefits of the plain clustering algorithm with regard to other approaches for clustering. Experiments using both synthetic and real data have been performed in order to evaluate the differences between the proposed methodology and the plain use of the Maximum Variance algorithm. According to the results obtained, the proposal constitutes an efficient and accurate alternative.
Efficient and Accurate OTU Clustering with GPU-Based Sequence Alignment and Dynamic Dendrogram Cutting.
2015
De novo clustering is a popular technique to perform taxonomic profiling of a microbial community by grouping 16S rRNA amplicon reads into operational taxonomic units (OTUs). In this work, we introduce a new dendrogram-based OTU clustering pipeline called CRiSPy. The key idea used in CRiSPy to improve clustering accuracy is the application of an anomaly detection technique to obtain a dynamic distance cutoff instead of using the de facto value of 97 percent sequence similarity as in most existing OTU clustering pipelines. This technique works by detecting an abrupt change in the merging heights of a dendrogram. To produce the output dendrograms, CRiSPy employs the OTU hierarchical clusterin…
The role of power line rights-of-way as an alternative habitat for declined mire butterflies
2011
Habitat loss is one of the greatest threats for biodiversity. In Finland, two thirds of natural mires have been drained for silviculture, which transforms open wetlands into dense forests. However, vegetation management of power line rights-of-way (ROW) maintain the drained mires as open areas. The aim of this study was to determine the effect of the power line ROW vegetation management on butterfly abundance, species richness and community structure by comparing the managed power line ROWs to unmanaged drained control sites and to natural mires. The species richness or abundance of mire butterflies did not differ between the power line ROWs and natural mires. In contrast, both species rich…
Vertical distribution of crop load and fruit quality within vase- and Y-shaped canopies of 'Elegant Lady' peach
2005
Canopy shape and depth may influence crop uniformity of peach trees at harvest. To test this hypothesis we examined yield distribution and fruit quality changes at different canopy levels of peach trees trained to delayed vase (DV) and perpendicular Y (Y). Trees of both training forms were divided vertically into six or seven 50-cm-deep layers and fruit was harvested at commercial ripening from each layer separately. Regardless of training form, number of fruit and yield per layer were highest in the central part of the canopy, but more evenly distributed among canopy layers in Y trees. In DV trees, fruit weight decreased linearly from top to bottom, whereas it remained constant along the t…
E.O.-based estimation of transpiration and crop water requirements for vineyards: a case study in southern Italy
2014
An efficient use of water for irrigation is a challenging task. From an agronomical point of view, it requires establishing the optimal amount of water to be supplied, at the correct time, based on phenological phase and water stress spatial distribution. Indeed, the knowledge of the actual water stress is essential for agronomic decisions, vineyards need to be managed to maintain a moderate water stress, thus allowing to optimize berries quality and quantity. Methods for quickly quantifying where, when and in what extent, vines begin to experience water stress are beneficial. Traditional point based methodologies, such those based on Scholander pressure chamber, even if well established ar…