Search results for "complex"

showing 10 items of 5889 documents

Thermal stability of trimeric light-harvesting chlorophyll a/b complex (LHCIIb) in liposomes of thylakoid lipids.

2006

The major light-harvesting chlorophyll a/b complex (LHCIIb) of photosystem (PS) II functions by harvesting light energy and by limiting and balancing the energy flow directed towards the PSI and PSII reaction centers. The complex is predominantly trimeric; however, the monomeric form may play a role in one or several of the regulatory functions of LHCIIb. In this work the dissociation temperature was measured of trimeric LHCIIb isolated from Pisum thylakoids and inserted into liposomes made of various combinations of thylakoid lipids at various protein densities. Dissociation was measured by monitoring a trimer-specific circular dichroism signal in the visible range. The LHCIIb density in t…

Circular dichroismBiophysicsLight-Harvesting Protein ComplexesTrimerPhotochemistryBiochemistryThylakoidsDissociation (chemistry)Membrane LipidsProtein Structure QuaternaryTrimerDiacylglycerol kinasePhotosystemPlant ProteinsLiposomeChemistryCircular DichroismLight harvesting complexes of photosystem II (LHCIIb)Peasfood and beveragesThermal stabilityCell BiologyLiposomeThylakoid lipidsB vitaminsThylakoidMultiprotein ComplexesLiposomesThermodynamicslipids (amino acids peptides and proteins)Biochimica et biophysica acta
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Role of Seroalbumin in the Cytotoxicity of cis-Dichloro Pt(II) Complexes with (N^N)-Donor Ligands Bearing Functionalized Tails

2018

Given the potent anticancer properties of cisdiamminedichloroplatinum( II) and knowing its mode of action, we synthesized four new cis-[PtCl2(N^N)] organoplatinum complexes, two with N-substituted pbi ligands (pbiR = 1-R-2-(2-pyridyl)benzimidazole) (namely, 1 and 2) and two more with 4,4′-disubstituted bpy ligands (bpy = 2,2′-bipyridine) (namely, 3 and 4). We explored their cytotoxicity and ability to bind to deoxyguanosine monophosphate (dGMP), DNA, and albumin models. By 1H NMR and UV−vis spectroscopies, circular dichroism, agarose gel electrophoresis, differential scanning calorimetry measurements, and density functional theory calculations, we verified that only 3 can form aquacomplex s…

Circular dichroismCell SurvivalStereochemistryLigandPlasma protein bindingHeLa CellLigands010402 general chemistry01 natural sciencesChemistry Physical and theoreticalInorganic ChemistryHeLaBipyridinechemistry.chemical_compoundDrug StabilityCoordination ComplexesQuímica físicaHumansPhysical and Theoretical ChemistryCytotoxicityA549 CellOrganoplatinumPlatinumCoordination ComplexeCalorimetry Differential ScanningMolecular Structurebiology010405 organic chemistryChemistryRational designDeoxyguanine NucleotidesSerum Albumin BovineDNAbiology.organism_classification0104 chemical sciencesSettore CHIM/03 - Chimica Generale E InorganicaA549 CellsAgarose gel electrophoresisDeoxyguanine NucleotideHumanHeLa CellsProtein BindingInorganic Chemistry
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The interaction of Schiff Base complexes of nickel(II) and zinc(II) with duplex and G-quadruplex DNA

2017

The duplex and G-quadruplex DNA-binding of six nickel(II) and zinc(II) complexes of three salphen-like ligands (salphen = N,N?-bis-salicylidene-1,2-phenylenediaminato) was investigated by UV-visible absorption and circular dichroism spectroscopy. The results obtained, in particular the values of the DNA-binding constants, Kb, point out that the nickel(II) complexes show a higher affinity toward both duplex and G-quadruplex DNA, compared to the analogous zinc(II) complexes. Interestingly, the zinc(II) complexes possess high selectivity toward G-quadruplex DNA, being negligible their binding with duplex DNA. Molecular dynamics (MD) simulations provided atomistic models for the interpretation …

Circular dichroismComputational chemistryInorganic chemistryBinding constantchemistry.chemical_element-Zinc010402 general chemistryG-quadruplex01 natural sciencesBiochemistryInorganic Chemistrychemistry.chemical_compoundCoordination ComplexesNickelheterocyclic compoundsSchiff BasesSchiff baseG-quadruplex010405 organic chemistryDNABinding constant0104 chemical sciencesG-QuadruplexesNickelCrystallographyZincchemistryDuplex (building)Settore CHIM/03 - Chimica Generale E InorganicaDNA
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(Dipyrido[3,2-a:2',3'-c]phenazine)(glycinato)copper(II) perchlorate: a novel DNA-intercalator with anti-proliferative activity against thyroid cancer…

2012

Abstract A novel copper(II) heteroleptic complex of dipyrido[3,2-a:2′,3′-c]phenazine (dppz) and glycinato (gly) as chelating ancillary ligand, [Cu(dppz)(gly)]ClO 4 ( 1 ), was synthesized and characterized. X-ray crystallography revealed that the coordination geometry of the cationic [Cu(dppz)(gly)] + unit is hexacoordinated and shows a distorted octahedral coordination geometry in the solid state, with the N,N and N,O chelating atoms of dppz and glycinato, respectively, in the square plane and in which the planar units are connected in a monodimensional polymeric array by the apical copper coordination of the second carboxylic oxygen atom. Biological assays showed that 1 exhibits a remarkab…

Circular dichroismCopper(II) perchlorateStereochemistryIntercalation (chemistry)Phenazinechemistry.chemical_elementAntineoplastic AgentsLigandsBiochemistryInorganic Chemistrychemistry.chemical_compoundCoordination ComplexesCell Line TumorHumansChelationThyroid NeoplasmsDNA CleavageCoordination geometryLigandDNACopper DNA dppz Glycine Intercalation Thyroid cancerCopperIntercalating AgentschemistrySettore CHIM/03 - Chimica Generale E Inorganicaxray cristallogrphyPhenazinesJournal of inorganic biochemistry
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The interaction of native calf thymus DNA with FeIII-dipyrido[3,2-a:2’,3’-c]phenazine

2008

The mono and bis dipyrido[3,2-a:2',3'-c]phenazine (dppz) adducts of iron(III) chloride, i.e. [Fe(dppz)]Cl(3) and [Fe(dppz)(2)]Cl(3), have been synthesized and characterized. The interaction of the Fe(III)dppz hydrolyzed aquo complex with native calf thymus DNA has been monitored as a function of the metal complex-DNA molar ratio, by variable temperature UV absorption spectrophotometry, circular dichroism (CD) and fluorescence spectroscopy. The results obtained in solution at various ionic strength values give support for a tight intercalative binding of the Fe(III)dppz cation with DNA. In particular, the appearance of induced CD bands, caused by the addition of Fe(III)dppz, indicate the exi…

Circular dichroismDNA dppz Intercalation Iron SpectroscopyIntercalation (chemistry)PhenazinePhotochemistryNucleic Acid DenaturationBiochemistryFerric CompoundsFluorescenceAdductInorganic ChemistryMetalchemistry.chemical_compoundDNA AdductsMetal aquo complexChemistryCircular DichroismDNABinding constantCrystallographyIonic strengthSettore CHIM/03 - Chimica Generale E Inorganicavisual_artvisual_art.visual_art_mediumPhenazines
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Tight DNA-protein complexes isolated from barley seedlings are rich in potential guanine quadruplex sequences

2020

Background The concept of chromatin domains attached to the nuclear matrix is being revisited, with nucleus described as a set of topologically associating domains. The significance of the tightly bound to DNA proteins (TBP), a protein group that remains attached to DNA after its deproteinization should be also revisited, as the existence of these interactions is in good agreement with the concept of the topologically associating domain. The work aimed to characterize the DNA component of TBP isolated from barley seedlings. Methods The tight DNA-protein complexes from the first leaves, coleoptiles, and roots of barley seedlings were isolated by purification with chromatography on nitrocell…

Circular dichroismGuaninelcsh:MedicinePlant ScienceGC-rich DNAG-quadruplexDeproteinisation-resistant DNA-protein complexesGeneral Biochemistry Genetics and Molecular Biology03 medical and health scienceschemistry.chemical_compoundBarleyMolecular Biology030304 developmental biology0303 health sciencesOligonucleotideChemistryGeneral Neurosciencelcsh:R030302 biochemistry & molecular biologyStructural geneCell BiologyGenomicsGeneral MedicineNuclear matrixG-quadruplexesChromatinBiochemistryGeneral Agricultural and Biological SciencesDNAPeerJ
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The interaction of native DNA with iron(III)- N ,N'-ethylene-bis(salicylideneiminato)-chloride.

2004

Abstract The interaction between native calf thymus deoxyribonucleic acid (DNA) and Fe III - N , N ′ -ethylene-bis (salicylideneiminato)-chloride, Fe(Salen)Cl, was investigated in aqueous solutions by UV–visible (UV–vis) absorption, circular dichroism (CD), thermal denaturation and viscosity measurements. The results obtained from CD, UV–vis and viscosity measurements exclude DNA intercalation and can be interpreted in terms of an electrostatic binding between the Fe(Salen) + cation and the phosphate groups of DNA. The trend of the UV–vis absorption band of the Fe(Salen)Cl complex at different ratios [DNA phosphate ]/[Fe(Salen)Cl] and the large increase of the melting temperature of DNA in …

Circular dichroismInorganic chemistryNucleic Acid DenaturationBiochemistryChlorideFerric CompoundsInorganic Chemistrychemistry.chemical_compoundMetal salen complexesmedicineAnimalsSchiff BasesAqueous solutionChemistryViscosityCircular DichroismSpectrum AnalysisDNAIron IsotopesCrystallographyDNA IntercalationAbsorption bandCattleAbsorption (chemistry)DNAmedicine.drugJournal of inorganic biochemistry
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Experimental and theoretical characterization of the strong effects on DNA stability caused by half-sandwich Ru(II) and Ir(III) bearing thiabendazole…

2020

Abstract: The synthesis and characterization of two half-sandwich complexes of Ru(II) and Ir(III) with thiabendazole as ancillary ligand and their DNA binding ability were investigated using experimental and computational methods. 1H NMR and acid–base studies have shown that aquo-complexes are the reactive species. Kinetic studies show that both complexes bind covalently to DNA through the metal site and non covalently through the ancillary ligand. Thermal stability studies, viscosity, circular dichroism measurements and quantum chemical calculations have shown that the covalent binding causes breaking of the H-bonding between base pairs, bringing about DNA denaturation and compaction. Addi…

Circular dichroismIridium(III)Base pairMolecular Dynamics SimulationIridium010402 general chemistry01 natural sciencesBiochemistryRutheniumInorganic ChemistryMetalchemistry.chemical_compoundMolecular dynamicsCoordination ComplexesThiabendazole010405 organic chemistryChemistryDNALigand (biochemistry)0104 chemical sciencesDNA destabilizationCrystallographyHalf-sandwichCovalent bondSettore CHIM/03 - Chimica Generale E Inorganicavisual_artvisual_art.visual_art_mediumProton NMRNucleic Acid ConformationDNARuthenium(II)
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Cytotoxic hydrophilic iminophosphorane coordination compounds of d8 metals. Studies of their interactions with DNA and HSA

2012

The synthesis and characterization of a new water-soluble N,N-chelating iminophosphorane ligand TPAN-C(O)-2-NC(5)H(4) (N,N-IM) (1) and its d(8) (Au(III), Pd(II) and Pt(II)) coordination complexes are reported. The structures of cationic [AuCl(2)(N,N-IM)]ClO(4) (2) and neutral [MCl(2)(N,N-IM)] M=Pd (3), Pt(4) complexes were determined by X-ray diffraction studies or by means of density-functional calculations. While the Pd and Pt compounds are stable in mixtures of DMSO/H(2)O over 4 days, the gold derivative (2) decomposes quickly to TPAO and previously reported neutral gold(III) compound [AuCl(2)(N,N-H)] 5 (containing the chelating N,N-fragment HN-C(O)-2-NC(5)H(4)). The cytotoxicities of co…

Circular dichroismMagnetic Resonance SpectroscopyStereochemistryPhosphoranesAntineoplastic AgentsBiochemistryMedicinal chemistryArticleCoordination complexInorganic ChemistryX-Ray DiffractionCell Line TumorSpectroscopy Fourier Transform InfraredmedicineHumansChelationSerum Albuminchemistry.chemical_classificationCisplatinLigandCircular DichroismIsothermal titration calorimetryDNANuclear magnetic resonance spectroscopyHuman serum albuminSpectrometry FluorescencechemistryMetalsCisplatinHydrophobic and Hydrophilic Interactionsmedicine.drugJournal of Inorganic Biochemistry
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Novel atrazine-binding biomimetics inspired to the D1 protein from the photosystem II of Chlamydomonas reinhardtii.

2020

Biomimetic design represents an emerging field for improving knowledge of natural molecules, as well as to project novel artificial tools with specific functions for biosensing. Effective strategies have been exploited to design artificial bioreceptors, taking inspiration from complex supramolecular assemblies. Among them, size-minimization strategy sounds promising to provide bioreceptors with tuned sensitivity, stability, and selectivity, through the ad hoc manipulation of chemical species at the molecular scale. Herein, a novel biomimetic peptide enabling herbicide binding was designed bioinspired to the D1 protein of the Photosystem II of the green alga Chlamydomonas reinhardtii. The D1…

Circular dichroismPhotosystem IIProtein ConformationSupramolecular chemistryPlastoquinoneChlamydomonas reinhardtiiPeptide02 engineering and technologyMolecular Dynamics SimulationBiochemistryFluorescence spectroscopy03 medical and health scienceschemistry.chemical_compoundStructural BiologyBiomimeticsAmino Acid SequencePhotosynthesisMolecular Biology030304 developmental biologychemistry.chemical_classification0303 health sciencesbiologyRational designphotosystem IIPhotosystem II Protein ComplexGeneral Medicine021001 nanoscience & nanotechnologybiology.organism_classificationSpectrometry FluorescencechemistryArtificial peptides Atrazine sensing Rational designBiophysicsThermodynamicsAtrazine0210 nano-technologyPeptidesChlamydomonas reinhardtiiInternational journal of biological macromolecules
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