Search results for "computational"
showing 10 items of 5884 documents
A density functional theory study of uranium(VI) nitrate monoamide complexes.
2011
Density functional theory calculations were performed on uranyl complexed with nitrate and monoamide ligands (L) [UO(2)(NO(3))(2)·2L]. The obtained results show that the complex stability is mainly governed by two factors: (i) the maximization of the polarizability of the coordinating ligand and (ii) the minimization of the steric hindrance effects. Furthermore, the electrostatic interaction between ligands and uranium(vi) was found to be a crucial parameter for the complex stability. These results pave the way to the definition of (quantitative) property/structure relationships for the in silico screening of monoamide ligands with improved extraction efficiency of uranium(vi) in nitrate ac…
The role of fluorine in the stereoselective tandem Aza-Michael addition to acrylamide acceptors: An experimental and theoretical mechanistic study
2007
Aza-Michael additions of alpha-amino esters to fluorinated acceptors take place in a highly stereoselective manner, to give partially modified Psi-[NHCH2]retropeptides incorporating a hydrolytically stable trifluoroalanine mimic. The reaction mechanism has been investigated experimentally and theoretically, in order to explain the effect of the trifluoromethyl group on the reactivity and the origins of the experimentally observed stereocontrol. The reaction is a two-step process, involving a tandem aza-Michael addition followed by a stereoselective hydrogen transfer. Both steps are base-catalyzed. The high level of stereocontrol is the result of a combination of electrostatic interactions a…
A unified view of ligand-protected gold clusters as superatom complexes
2008
Synthesis, characterization, and functionalization of self-assembled, ligand-stabilized gold nanoparticles are long-standing issues in the chemistry of nanomaterials. Factors driving the thermodynamic stability of well documented discrete sizes are largely unknown. Herein, we provide a unified view of principles that underlie the stability of particles protected by thiolate (SR) or phosphine and halide (PR 3 , X) ligands. The picture has emerged from analysis of large-scale density functional theory calculations of structurally characterized compounds, namely Au 102 (SR) 44 , Au 39 (PR 3 ) 14 X 6 − , Au 11 (PR 3 ) 7 X 3 , and Au 13 (PR 3 ) 10 X 2 3+ , where X is either a halogen or a thiol…
DFT studies of COOH tip-functionalized zigzag and armchair single wall carbon nanotubes
2011
Structure and energy calculations of pristine and COOH-modified model single wall carbon nanotubes (SWCNTs) of different length were performed at B3LYP/6-31G* level of theory. From 1 to 9 COOH groups were added at the end of the nanotube. The differences in structure and energetics of partially and fully functionalized SWCNTs at one end of the nanotube are observed. Up to nine COOH groups could be added at one end of (9,0) zigzag SWCNT in case of full functionalization. However, for (5,5) armchair SWCNT, the full functionalization was impossible due to steric crowding and rim deformation. The dependence of substituent attachment energy on the number of substituents at the carbon nanotube ri…
An ab initio study of the enolboration of 3-pentanone mediated by boron monochlorides L2BCl
2001
Abstract Using ab initio methods at the HF/6-31G∗∗ level, we have studied the mechanism of the enolboration of 3-pentanone mediated by boron monochlorides L2BCl (L=H, methyl and isopropyl) and trimethyl amine. The size of the L group has been found to have a decisive influence on the configuration (E or Z) of the formed boron enolate. Thus, whereas our calculations predict that dimethylboron chloride yields the Z enolate with high stereoselectivity, diisopropylboron chloride is found to yield predominantly the E enolate. The difference in behavior is due mainly to steric features related to the conformational bias of the respective ketone–boron chloride complexes formed reversibly in the fi…
Polarization Force Fields for Peptides Implemented in ECEPP2 and MM2
2000
Abstract The empirical conformational energy program for peptides (ECEPP2) and molecular mechanics (MM2) have been used for the simulation of the For-Gly-NH2 backbone. I propose two different methods for the calculation of the polarization energy term: the polarization procedure by non-interacting induced dipoles (NID) which assumes scalar isotropic point polarizabilities and the polarization scheme by interacting induced dipoles (ID) which calculates tensor effective anisotropic point polarizabilities (method of Applequist). I present a comparative study of ECEPP2 and MM2 + polarization. I discuss molecular mechanics results including the total energy differences, partitional analyses of t…
Ab initio study of structure and energetics of species involved in the 2,4-dinitro-toluene hydrogenation on Pd catalysts
2002
Abstract Quantum-mechanical calculations, at HF level, were performed to gain chemical–physical basis information on the 2,4-dinitro-toluene hydrogenation occurring over palladium catalysts. To investigate the surface characteristics of the species involved in the reaction system, simplified molecular models including small metal clusters were considered. Remarkable findings, useful to elucidate the reaction mechanism and important parameters, working in time dependent Monte-Carlo simulations of the title reaction, were obtained; inter alia: the molar standard free energies of the molecules involved in the reaction, the volume occupied by the species in solution phase and the qualitative or…
Hydrogenation of 2,4-Dinitro-toluene on Pd/C Catalysts: Computational Study on the Influence of the Molecular Adsorption Modes and of Steric Hindranc…
2002
Abstract A new time-dependent Monte Carlo algorithm was developed to simulate isobar and isotherm three-phase batch hydrogenation of 2,4-dinitro-toluene on Pd/C catalysts. A new reaction mechanism was formulated, involving 9 and 27 toluene derivatives, in solution and adsorbed on the surface, respectively. In fact, three different ways of adsorption were considered for all surface derivatives. Microscopic mechanistic hypotheses were formulated analyzing the mimicked surface populations able to reproduce the experimental catalytic activity–selectivity patterns at different times, temperatures, reagent concentrations, and catalyst particle morphologies. The three different adsorption modes, g…
Syntheses, spectroscopic and structural properties of phenoxysilyl compounds : X-ray structures, FT-IR and DFT calculations
2013
Abstract The reaction of silicon disulfide with alkylphenols yields tetraphenoxysilane, cyclodisilthiane and silanethiol. The outcome of the reaction depends on the presence of the steric hindrance in the ortho position on the reacting phenol. New products of the reaction of silicon disulfide with phenols are characterized by FT-IR, NMR, X-ray diffraction and DFT calculations. The intramolecular interactions in the compounds are mainly XH---π (X = C, S) whereas the intermolecular interactions are either very weak CH---π/CH---O contacts found in aryloxysilane or electrostatic dipole–dipole attraction in cyclodisilthiane and silanethiol. The S–H---π interactions in the obtained silanethiol ar…
Synthesis, microwave spectrum, quantum chemical calculations, and conformational composition of a novel primary phosphine, cyclopropylethynylphosphin…
2014
International audience; The microwave spectrum of cyclopropylethynylphosphine, C3H5C≡CPH2, has been investigated in the 26-120 GHz spectral region. The spectrum is dominated by very rich and complex a-type R-branch pile-ups. There must be insignificant steric interaction between the phosphino group and the cyclopropyl ring due to the long distance between these two groups. However, the phosphino group does not undergo free or nearly free internal rotation. Instead, the spectra of two distinct conformers were assigned. Both these two forms have CS symmetry. The symmetry plane bisects the cyclopropyl ring and the phosphino group in both conformers, and the lone electron pair of the phosphino …