Search results for "computer.file_format"

FAME: Software for analysing rock microstructures

2016

Determination of rock microstructures leads to a better understanding of the formation and deformation of polycrystalline solids. Here, we present FAME (Fabric Analyser based Microstructure Evaluation), an easy-to-use MATLAB®-based software for processing datasets recorded by an automated fabric analyser microscope. FAME is provided as a MATLAB®-independent Windows® executable with an intuitive graphical user interface. Raw data from the fabric analyser microscope can be automatically loaded, filtered and cropped before analysis. Accurate and efficient rock microstructure analysis is based on an advanced user-controlled grain labelling algorithm. The preview and testing environments simplif…

Geophysical prospection of the Roman city of Pollentia, Alcúdia (Mallorca, Balearic Islands, Spain)

2016

Abstract We present the results of the geophysical investigation carried out in the Roman city of Pollentia, in the island of Mallorca. The ancient city was identified in the 19th century. Old and new archaeological excavations have helped to uncover a residential area, a theatre, the forum, several necropolises and other remains of the city, but a large unexplored area has still to be investigated. For instance, the limits of the ancient town and the presence of harbour structures are still unknown. The geophysical survey has covered an area of more than 20.000 m2 by integrating magnetic, electromagnetic, electrical and ground penetrating radar (GPR) methods. Many unseen archaeological fea…

The Global Naturalized Alien Flora (GloNAF) database.

2019

This dataset provides the Global Naturalized Alien Flora (GloNAF) database, ver-sion 1.2. Glo NAF represents a data compendium on th e occurrence and identit y of naturalizedalien vascular plant taxa across geographic regions (e.g. countries, states, provinces, districts,islands) around the globe. The dataset includes 13,939 taxa and covers 1,029 regions (including381 islands). The dataset is based on 210 data sources. For each ta x on-b y-region combination, wepr ovide information on whether the tax on is consider ed to be naturalized in the specific region(i.e. has established self-sustaining popula tions in the wild). Non-native taxa are marked as“alien”, when it is not clear whether the…

Interoperable real-time symbolic programming for smart environments

2019

Smart environments demand novel paradigms offering easy configuration, programming and deployment of pervasive applications. To this purpose, different solutions have been proposed ranging from visual paradigms based on mashups to formal languages. However, most of the paradigms proposed in the literature require further external tools to turn application description code into an executable program before the deployment on target devices. Source code generation, runtime upgrades and recovery, and online debugging and inspection are often cumbersome in these programming environments. In this work we describe a methodology for real-time and on-line programming in smart environments that is co…

Enriching standards-based digital thread by fusing as-designed and as-inspected data using knowledge graphs

2020

Abstract Realizing the digital thread is essential for linking and orchestrating data across the product lifecycle in smart manufacturing. Linking heterogeneous lifecycle data is critical to maintain associativity and traceability in a digital thread. Recently, researchers have successfully leveraged ontology models with knowledge graphs in engineering domains for threading different lifecycle data. One of the most successful of such efforts is OntoSTEP which enables the formal capture of information embedded in the STandard for Exchange of Product model data (STEP) data representation, or ISO 10303. Meanwhile, an emerging inspection standard, called the Quality Information Framework (QIF),…

All-atom simulations to studying metallodrugs/target interactions.

2021

Abstract Metallodrugs are extensively used to treat and diagnose distinct disease types. The unique physical–chemical properties of metal ions offer tantalizing opportunities to tailor effective scaffolds for selectively targeting specific biomolecules. Modern experimental techniques have collected a large body of structural data concerning the interactions of metallodrugs with their biomolecular targets, although being unable to exhaustively assess the molecular basis of their mechanism of action. In this scenario, the complementary use of accurate computational methods allows uncovering the minutiae of metallodrugs/targets interactions and their underlying mechanism of action at an atomic…

2015

The University of Minnesota Biocatalysis/Biodegradation Database and Pathway Prediction System (UM-BBD/PPS) has been a unique resource covering microbial biotransformation pathways of primarily xenobiotic chemicals for over 15 years. This paper introduces the successor system, enviPath (The Environmental Contaminant Biotransformation Pathway Resource), which is a complete redesign and reimplementation of UM-BBD/PPS. enviPath uses the database from the UM-BBD/PPS as a basis, extends the use of this database, and allows users to include their own data to support multiple use cases. Relative reasoning is supported for the refinement of predictions and to allow its extensions in terms of previo…

Conf-VLKA: A structure-based revisitation of the Virtual Lock-and-key Approach

2016

In a previous work, we developed the in house Virtual Lock-and-Key Approach (VLKA) in order to evaluate target assignment starting from molecular descriptors calculated on known inhibitors used as an information source. This protocol was able to predict the correct biological target for the whole dataset with a good degree of reliability (80%), and proved experimentally, which was useful for the target fishing of unknown compounds. In this paper, we tried to remodel the previous in house developed VLKA in a more sophisticated one in order to evaluate the influence of 3D conformation of ligands on the accuracy of the prediction. We applied the same previous algorithm of scoring and ranking b…

The Effects of Static and Dynamic Visual Representations as Aids for Primary School Children in Tasks of Auditory Discrimination of Sound Patterns. A…

2018

It has been proposed that non-conventional presentations of visual information could be very useful as a scaffolding strategy in the learning of Western music notation. As a result, this study has attempted to determine if there is any effect of static and dynamic presentation modes of visual information in the recognition of sound patterns. An intervention-based quasi-experimental design was adopted with two groups of fifth-grade students in a Spanish city. Students did tasks involving discrimination, auditory recognition and symbolic association of the sound patterns with non-musical representations, either static images (S group), or dynamic images (D group). The results showed neither s…

RepeatsDB 2.0: improved annotation, classification, search and visualization of repeat protein structures

2017

RepeatsDB 2.0 (URL: http://repeatsdb.bio.unipd.it/) is an update of the database of annotated tandem repeat protein structures. Repeat proteins are a widespread class of non-globular proteins carrying heterogeneous functions involved in several diseases. Here we provide a new version of RepeatsDB with an improved classification schema including high quality annotations for ∼5400 protein structures. RepeatsDB 2.0 features information on start and end positions for the repeat regions and units for all entries. The extensive growth of repeat unit characterization was possible by applying the novel ReUPred annotation method over the entire Protein Data Bank, with data quality is guaranteed by a…