Search results for "conformation"

showing 10 items of 1414 documents

Thioflavin T templates amyloid β(1–40) conformation and aggregation pathway

2015

Aβ(1-40) peptide supramolecular assembly and fibril formation processes are widely recognized to have direct implications in the progression of Alzheimer's disease. The molecular basis of this biological process is still unknown and there is a strong need of developing effective strategies to control the occurring events. To this purpose the exploitation of small molecules interacting with Aβ aggregation represents one of the possible routes. Moreover, the use specific labeling has represented so far one of the most common and effective methods to investigate such a process. This possibility in turn rests on the reliability of the probe/labels involved. Here we present evidences of the effe…

Protein StructureSecondaryAβ(1–40) peptideAmyloidProtein ConformationMolecular Sequence DataBiophysicsSupramolecular chemistryMolecular Dynamics SimulationProtein aggregationProtein Aggregation PathologicalBiochemistryProtein Structure SecondarySupramolecular assemblyProtein Aggregateschemistry.chemical_compoundProtein structureAlzheimer DiseasePathologicalSecondary structureAβ(1-40) peptideHumansBenzothiazolesAmino Acid SequenceFluorescent DyesAmyloid beta-PeptidesProtein StabilityOrganic ChemistryAlzheimer's diseaseProtein AggregationSmall moleculePeptide FragmentsSettore FIS/07 - Fisica Applicata(Beni Culturali Ambientali Biol.e Medicin)Peptide ConformationAlzheimer's disease; Aβ(1–40) peptide; Protein aggregation; Protein conformation; Secondary structure; Thioflavin T; Alzheimer Disease; Amino Acid Sequence; Amyloid beta-Peptides; Fluorescence Recovery After Photobleaching; Fluorescent Dyes; Humans; Molecular Dynamics Simulation; Molecular Sequence Data; Peptide Fragments; Protein Aggregates; Protein Aggregation Pathological; Protein Conformation; Protein Multimerization; Protein Stability; Protein Structure Secondary; ThiazolesThiazolesBiophysicBiochemistrychemistryThioflavin TBiophysicsThioflavinProtein MultimerizationFluorescence Recovery After PhotobleachingBiophysical Chemistry
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Two distinct phases characterize thermal aggregation of b-Lactoglobulin at neutral pH

2011

Protein aggregationAFMConformational changeSettore FIS/07 - Fisica Applicata(Beni Culturali Ambientali Biol.e Medicin)
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LASS6, an additional member of the longevity assurance gene family

2005

Longevity assurance genes (LAGs) represent a subgroup of the homeobox gene family. Five mammalian homologs have been reported, and the corresponding proteins have previously been investigated with respect to their key role in ceramide synthesis. However, members of the LAG family have been shown to be involved in cell growth regulation and cancer differentiation. In an effort to characterize additional members of the LAG family, we have screened the latest releases of genomic databases and report on the bioinformatic characterization of yet another member, LAG1 longevity assurance homolog 6 (LASS6). Like other LAG family members, the LASS6 protein contained a homeodomain and LAG1 domain. In…

Protein familyProtein ConformationIn silicoLongevityMolecular Sequence DataBiologyHomology (biology)MiceDatabases GeneticSphingosine N-AcyltransferaseGeneticsAnimalsHumansGene familyAmino Acid SequenceGeneZebrafishPhylogenyZebrafishHomeodomain ProteinsGeneticsBase SequenceGenome HumanMicroarray analysis techniquesGenes HomeoboxMembrane ProteinsGeneral Medicinebiology.organism_classificationRatsChromosomes Human Pair 2HomeoboxInternational Journal of Molecular Medicine
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Novel avidin-like protein from a root nodule symbiotic bacterium, Bradyrhizobium japonicum.

2005

Bradyrhizobium japonicum is an important nitrogenfixing symbiotic bacterium, which can form root nodules on soybeans. These bacteria have a gene encoding a putative avidin- and streptavidin-like protein, which bears an amino acid sequence identity of only about 30% over the core regions with both of them. We produced this protein in Escherichia coli both as the full-length wild type and as a C-terminally truncated core form and showed that it is indeed a high affinity biotin-binding protein that resembles (strept)avidin structurally and functionally. Because of the considerable dissimilarity in the amino acid sequence, however, it is immunologically very different, and polyclonal rabbit and…

Protein familyProtein ConformationMolecular Sequence DataBiotinmedicine.disease_causeBiochemistryBacterial ProteinsmedicineAnimalsHumansAmino Acid SequenceBradyrhizobiumAntigensMolecular BiologyGeneEscherichia coliPeptide sequencebiologyCell Biologybiology.organism_classificationAvidinBiochemistryPolyclonal antibodiesbiology.proteinRabbitsCarrier ProteinsSequence AlignmentBacteriaBradyrhizobium japonicumAvidinThe Journal of biological chemistry
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Effect of transfection with PLP2 antisense oligonucleotides on gene expression of cadmium-treated MDA-MB231 breast cancer cells

2012

Emerging evidence indicates that cadmium (Cd) is able to regulate gene expression, drastically affecting the pattern of transcriptional activity in human normal and pathological cells. We have already shown that exposure of MDA-MB231 breast cancer cells to 5 μM CdCl(2) for 96 h, apart from significantly affecting mitochondrial metabolism, induces modifications of the expression level of genes coding for members of stress response-, mitochondrial respiration-, MAP kinase-, NF-κB-, and apoptosis-related pathways. In the present study, we have expanded the knowledge on the biological effects of Cd-breast cancer cell interactions, indicating PLP2 (proteolipid protein-2) as a novel member of the…

ProteolipidsApoptosisBreast NeoplasmsTransfectionBiochemistryAnalytical ChemistryCadmium ChlorideStress PhysiologicalCell Line TumorGene expressionHumansRNA MessengerSettore BIO/06 - Anatomia Comparata E Citologiaskin and connective tissue diseasesGeneCaspaseHeat-Shock ProteinsMARVEL Domain-Containing Proteinsbiologycadmium PLP2 breast cancer differential display-PCR caspase gene expressionTransfectionSuicide geneOligonucleotides AntisenseMolecular biologyGene Expression Regulation NeoplasticApoptosisMitogen-activated protein kinaseCaspasesCancer cellbiology.proteinNucleic Acid ConformationFemale
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Solution and thermal behaviour of novel dicationic imidazolium ionic liquids

2013

A new class of functionalised dicationic ionic liquids, containing a central cationic unit capped by a basic functionality (imidazole), has been synthesised. These salts have been characterised in isotropic solution using proton and 2D-NMR spectroscopy, and their thermal stability has been studied by DSC and TGA. All these novel salts contain the 1-(1-imidazolylmethyl)-3,5-di{1-(3'-octylimidazolylmethyl)}-benzene cation as a defining structural motif. Salts of both singly and doubly charged anions were prepared and, in particular, the selected monoanions (Br(-), [BF4](-), or [NTf2](-)) differ in size, shape and hydrogen-bonding ability, whereas the dianions differ in the nature of the space…

ProtonOrganic ChemistryInorganic chemistryCationic polymerizationSettore CHIM/06 - Chimica OrganicaBiochemistryionic liquids NMR TGA DSCIonchemistry.chemical_compoundCrystallographychemistryIonic liquidImidazoleThermal stabilityPhysical and Theoretical ChemistrySpectroscopyConformational isomerism
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2-(1,3-Oxazolin-2-yl)pyridine and 2,6-bis(1,3-oxazolin-2-yl) pyridine

2018

The data presented in this article are related to research articles “Titanium and vanadium catalysts with oxazoline ligands for ethylene-norbornene (co)polymerization (Ochędzan-Siodłak et al., 2018). For the title compounds, 2-(1,3-oxazolin-2-yl)pyridine (Py-ox) and 2,6-bis(1,3-oxazolin-2-yl)pyridine (Py-box), the single-crystal X-ray diffraction measurement together with NMR, GC, MS, DSC analysis, like also the method of crystallization are presented. Keywords: Ligands, Oxazoline, Pyridine, Conformation, Association

Pyridinechemistry.chemical_elementVanadiumOxazolinelcsh:Computer applications to medicine. Medical informatics010402 general chemistryLigands01 natural sciencesMedicinal chemistrylaw.inventionCatalysisAssociationchemistry.chemical_compoundlawPyridineCrystallizationConformationlcsh:Science (General)OxazolineMultidisciplinary010405 organic chemistry0104 chemical sciencesChemistrychemistryPolymerizationlcsh:R858-859.7lcsh:Q1-390TitaniumData in Brief
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Pharmacological activity of new histamine analogues.

1974

PyridinesReceptors DrugImmunologyPharmacology toxicologyGuinea PigsMolecular ConformationPharmacologyIn Vitro TechniquesToxicologychemistry.chemical_compoundStructure-Activity RelationshipDogsIleumMedicineAnimalsPharmacology (medical)Heart AtriaPharmacologyAniline Compoundsbusiness.industryImidazolesBiological activityAcetylcholinechemistrybusinessHistamineHistamineMuscle ContractionAgents and actions
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Conformational and Tautomeric Control by Supramolecular Approach in Ureido-N-iso-propyl,N’-4-(3-pyridin-2-one)pyrimidine

2019

Ureido-N-iso-propyl,N&rsquo

PyrimidineStereochemistryMolecular ConformationSupramolecular chemistryPharmaceutical ScienceArticleCatalysisAnalytical Chemistrylcsh:QD241-441chemistry.chemical_compoundIsomerismlcsh:Organic chemistryDrug DiscoveryPyridineUreaMoleculeMoietyPhysical and Theoretical ChemistryMolecular switchvetysidoksetintermolecular interactionsOrganic ChemistryTemperaturemolekyylithydrogen bondingTautomermolecular switchKineticstautomerismPyrimidineschemistryChemistry (miscellaneous)Proton NMRQuantum TheoryThermodynamicsMolecular MedicineProtonstautomeria
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A theoretical study of solvent effects on the conformational equilibria of neutral glycine in aqueous solution

2003

Abstract In this work conformational equilibrium of neutral glycine in solution is systematically investigated by using DFT and MP2 methods combined with solvent continuum models. A systematic exploration of the potential energy surface and full geometry optimizations for several conformers have been carried out in the gas phase and aqueous solution at the MP2/6-31+G** and B3LYP/6-31+G** levels. Zero-point and thermal contributions to the free energy have been obtained at the B3LYP level. Both theoretical levels lead to very similar results, in geometrical and energetic terms, both in the gas phase and in solution. Solvent effects play an important role on the conformational equilibria of n…

Quantitative Biology::BiomoleculesAqueous solutionChemistryCondensed Matter PhysicsBiochemistryTautomerSolventEnergy minimumComputational chemistryPotential energy surfaceThermalPhysics::Atomic and Molecular ClustersPhysics::Chemical PhysicsPhysical and Theoretical ChemistrySolvent effectsConformational isomerismJournal of Molecular Structure: THEOCHEM
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