Search results for "conformation"
showing 10 items of 1414 documents
Insights on the origin of catalysis on glycine N-methyltransferase from computational modeling.
2018
The origin of enzyme catalysis remains a question of debate despite much intense study. We report a QM/MM theoretical study of the SN2 methyl transfer reaction catalyzed by a glycine N-methyltransferase (GNMT) and three mutants to test whether recent experimental observations of rate-constant reductions and variations in inverse secondary α-3H kinetic isotope effects (KIEs) should be attributed to changes in the methyl donor−acceptor distance (DAD): is catalysis due to a compression effect? Semiempirical (AM1) and DFT (M06-2X) methods were used to describe the QM subset of atoms, while OPLS-AA and TIP3P classical force fields were used for the protein and water molecules, respectively. The …
Stereoselective syntheses of piperidinones and their modification by organometallic coupling reactions
2007
Dehydropiperidinones stereoselectively obtained from N-arabinosyl imines were iodinated at the enaminone structure. Knochel iodine-magnesium exchange afforded Grignard compounds of these piperidinone derivatives which reacted, either directly or after transmetalation to zinc or copper intermediates, with alkyl-, aryl- or acylhalides to give correspondingly substituted piperidinones. Stereoselective conjugate allyl cuprate addition to a thus obtained 5-allyl dehydropiperidinone and ring-closing metathesis of the product gave a hydroquinolinone containing three stereogenic centers.
Geometric Structure and Torsional Potential of Biisothianaphthene. A Comparative DFT and ab Initio Study
1997
We present a study of the torsional potential of biisothianaphthene and compare it to that of bithiophene. The calculations are performed at the ab initio and semiempirical Hartree−Fock (HF), ab initio post-Hartree−Fock, and density functional theory (DFT) levels. Our study has two major aims: (i) on the physico-chemical side, to asses the optimal conformation of biisothianaphthene and evaluate the rotational barriers toward coplanar structures and (ii) on the methodological side, to asses the usefulness of DFT approaches. In contrast to previous estimates, the torsional potential of biisothianaphthene is found to differ markedly from that of bithiophene. For biisothianaphthene, strongly r…
Theoretical study of electronically excited cis- and trans-glyoxal
1997
Abstract The equation-of-motion coupled cluster method for excitation energies in the singles and doubles approximation (EOMEE-CCSD) is applied to an investigation of the structure and harmonic frequencies of planar conformers of glyoxal in their first excited singlet states. For the trans-isomer, agreement between calculated harmonic frequencies and observed fundamentals is generally satisfactory, although the theoretical values are slightly more than 10% too high for the carbonyl stretching modes. Parallel calculations of the corresponding ground state properties allow for an empirical prediction of the excited state frequencies in which calculated differences in normal-mode frequencies a…
1H, 13C NMR spectral and single crystal structural studies of toxaphene congeners. Quantum chemical calculations for preferred conformers of 2,5-endo…
2005
Abstract The 1H and 13C NMR chemical shifts for six toxaphene congeners: 2-exo,3-endo,6-exo,8,9,10-hexachloro- (1), 2-exo,3-endo,5-exo,9,9,10,10-heptachloro- (2), 2-exo,3-endo,6-exo,8,9,10,10-heptachloro- (3), 2-exo,3-endo,5-exo,6-endo,8,9,10-heptachloro- (4), 2-exo,3-endo,5-exo,6-endo,8,9,9,10-octachlorobornane (5) and 2,5-endo,6-exo,8,9,9,10,10-octachloro-2-bornene (6) are reported. Their chemical shift assignments have been obtained by means of Pulsed Field Gradient (PFG) Double Quantum Filtered (DQF) 1H,1H correlation spectroscopy (COSY), PFG 1H,13C Heteronuclear Multiple Quantum Coherence (HMQC) and PFG 1H,13C Heteronuclear Multiple Bond Correlation (HMBC) experiments. A single crystal…
Chlorodicyclopentadienyloxoniobium(V) complexes revisited: The origin of the asymmetry in the 1H- and 13C-NMR spectra, X-ray crystal structures and a…
2000
Abstract 1H- and 13C-NMR spectra of chlorodicyclopentadienyloxoniobium(V) complex I and its four 1,1′-dialkyl substituted derivatives II–V have been recorded and assigned based on DQF 1H,1H-COSY and PFG 1H,13C-HMQC and HMBC experiments. Non-equivalences of all cyclopentadienyl protons and carbons in II–V (as reflected by their different 1H- and 13C-NMR chemical shifts) are explained by synchronous and out-of-phase rotations of the substituted cyclopentadienyl rings. A non-equivalence of the methyls in III (1,1′-di-isopropyl) is explained by a detailed inspection of the rotamers of the isopropyl groups. The X-ray structural data show that III and IV (1-methyl-1′-tert-butyl) crystallize in th…
Electro-optical and laser spectrofluorimetry study of coumarins 7 and 30: evidence for the existence of the close-lying electronic states and conform…
1997
Our experiments and calculations reveal a set of anomalous and interesting properties of coumarin 7 (CU7) and coumarin 30 (CU30) in solution. The spectral dependence of electro-optical coefficients and, consequently, dipole moments indicates that the absorption band is a superposition of several (at least two) electronic transitions. Probably, there are two close-lying π,π* singlet electronic excited states which contribute to the first absorption band. The calculations using the MM2 program show that both dyes in the ground state have two stable plane anti conformers. From time-resolved spectrofluorimetric measurements we obtained evidence for the existence of conformers in paraffin oil so…
Crystal structure and IR spectrum of 1-O-α-d-glucopyranosyl-d-mannitol–ethanol (2/1)
1999
Abstract 1- O - α - d -Glucopyranosyl- d -mannitol–ethanol (2/1), (C 12 H 24 O 11 ) 2 –C 2 H 5 OH, crystallizes in the monoclinic space group P2 1 with unit cell dimensions a =11.4230(8) A, b =9.525(4) A, c =15.854(2) A, β =102.751(7)° and V =1682.4(7) A 3 , Z =2, D x =1.45 Mg m −3 , λ (Mo-K α )=0.71069 A, μ=0.128 mm −1 , F (000)=788 and T =293(2) K. The structure was solved by direct methods and refined by least-squares calculations on F 2 to R 1 =0.0371[ I >2 σ ( I )], and 0.0930 (all data, 3542 independent reflections, R int =0.021). There are two molecules of glucopyranosylmannitol (GPM) and one ethanol molecule in the asymmetric unit, and the glucopyranosyl ring adopts a chair conforma…
Why Do Chemically Similar Pharmaceutical Molecules Crystallize in Different Structures: A Case of Droperidol and Benperidol
2016
A detailed study of molecular conformation and intermolecular interactions in the experimental crystal structures and general trends observed in the Cambridge Structural Database as well as theoretical calculations were performed to identify the reason for the formation of different crystal structures of two chemically very similar pharmaceutical molecules benperidol and droperidol. The most important difference between both molecules was the weak intermolecular interactions formed by the central ring which therefore was responsible for the formation of different crystal structures. Cross-seeding experiments were performed to check the possibility for the formation of mutually isostructural…
Crystalline self-assembly induced by aromatic edge-to-face interactions: the crystal structure of 2,6,6,10-tetrabenzyl-2,10-diaza-6-azonia[11]paracyc…
2002
The crystal structure of 2,6,6,10-tetrabenzyl-2,10-diaza-6-azonia[11]paracyclophane bromide reveals several intermolecular aromatic edge-to-face interactions which are important in the three-dimensional growing of the crystalline structure. Molecular dynamics and semiempirical studies indicate that the conformer found in the crystal is not the most stable in solution confirming the important role that edge-to-face interactions play in the structural arrangement found in the solid state.