Search results for "cop"

showing 10 items of 25502 documents

Plankton Tracker: A novel integrated system to investigate the dynamic sinking behavior in phytoplankton

2020

Abstract Phytoplankton sinking is an important property that can determine community composition, affecting nutrient and light absorption in the photic zone, and influencing biogeochemical cycling via material loss to the deep ocean. To date, the difficulty in exploring the sinking processes is partly due to methodological limitations in measuring phytoplankton sinking rate. However, in the last decade, works have illustrated various methods based on some non-invasive and low perturbing approaches (laser scanner, video-microscopy, fluorescence spectroscopy). In this study, we review the methods for sinking rate estimation and describe the Plankton Tracker, a novel integrated system to inves…

0106 biological sciencesBiogeochemical cycle010603 evolutionary biology01 natural sciencesDeep seaCoscinodiscus sp.PhytoplanktonPhotic zoneVideo-microscopyEcology Evolution Behavior and SystematicsIndividual-based tracking methodEcologybiology010604 marine biology & hydrobiologyApplied MathematicsEcological ModelingDinoflagellatePlanktonbiology.organism_classificationComputer Science ApplicationsOceanographyComputational Theory and MathematicsModeling and SimulationPhytoplanktonSinking behaviorTrajectoryEnvironmental science
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Development of picoplankton during natural and enhanced mixing under late-winter ice

2014

We studied the development of autotrophic picophytoplankton and heterotrophic bacterioplankton during the tran- sition from winter ice cover to open water under natural and manipulated mixing conditions in eutrophic Lake Vesijarvi. During the melting of the snow and ice cover, a convection layer developed which eventually met the che- mocline at the interface between the oxic and anoxic water masses. However, in the years with mechanically enhanced mixing, the whole water column remained well oxygenated and the deepening of penetrative convection was facilitated. Stochastic variations in weather, primarily the thickness of the snow cover, likely determined the timing of picophytoplankton gr…

0106 biological sciencesBiomass (ecology)Ecology010604 marine biology & hydrobiologyta1172BacterioplanktonAquatic ScienceSnow010603 evolutionary biology01 natural sciencesAnoxic watersWater columnOceanography13. Climate actionEnvironmental scienceAutotrophEutrophicationPicoplanktonEcology Evolution Behavior and SystematicsJournal of Plankton Research
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Influence of biotic variables on invertebrate size structure and diversity in coastal wetlands of Southeastern Spain

2016

Abstract Biomass and size-based estimations provide relevant information regarding ecosystem functioning and biotic interactions. Our aims were to study the effect of fish and macrophytes on the size structure of invertebrate assemblages (from rotifers to insects) in a set of coastal water bodies, estimating the biomass (total and main invertebrate groups), the biomass-size spectra (model of Pareto) and size diversity. In fishless ponds, cladoceran and ostracod biomass were higher, and they presented greater size diversity. In fish ponds, rotifer biomass presented greater proportion; while in fishless ponds, cladocerans were usually the most abundant taxa and the largest organisms. The biom…

0106 biological sciencesBiomass (ecology)biologyEcology010604 marine biology & hydrobiologyfungiAquatic ScienceOceanographybiology.organism_classification010603 evolutionary biology01 natural sciencesZooplanktonPredationMacrophyteAbundance (ecology)EcosystemCopepodInvertebrateEstuarine, Coastal and Shelf Science
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Mineral phase in shell repair of Manila clam Venerupis philippinarum affected by brown ring disease.

2011

14 pages; International audience; The mineral phase of shell repair in the Manila clam Venerupis philippinarum affected by brown ring disease (BRD) was characterised at various scales and at various stages of shell repair by confocal Raman microspectrometry and scanning electron microscopy. Spherulitic and quadrangular aragonite microstructures associated with polyene pigments were clearly observed. Von Kossa staining showed that at the beginning of shell repair, hemocytes are filled with insoluble calcium carbonate salts in all fluids and then are transported toward the extrapallial fluids and the repair sites. Our analyses suggest that after a Vibrio tapetis attack and BRD deposit some cl…

0106 biological sciencesBiomineralizationHemocytesMineralogyAquatic Scienceengineering.materialSpectrum Analysis Raman010603 evolutionary biology01 natural sciences03 medical and health scienceschemistry.chemical_compoundRaman microspectrometryVenerupis philippinarumAnimalsVon Kossa stain[SDV.IB.BIO]Life Sciences [q-bio]/Bioengineering/BiomaterialsMolluscaEcology Evolution Behavior and Systematics030304 developmental biologyVibrio0303 health sciencesbiologyAragoniteBivalviabiology.organism_classification[ SDV.IB.BIO ] Life Sciences [q-bio]/Bioengineering/BiomaterialsShell microstructureBivalviaCalcium carbonateAragonitechemistry[SDU]Sciences of the Universe [physics]engineeringBiophysicsCarbonateMolluscCalcium carbonateScanning electron microscopyBiomineralizationDiseases of aquatic organisms
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The shell matrix of the pulmonate land snail Helix aspersa maxima.

2012

12 pages; International audience; In mollusks, the shell mineralization process is controlled by an array of proteins, glycoproteins and polysaccharides that collectively constitute the shell matrix. In spite of numerous researches, the shell protein content of a limited number of model species has been investigated. This paper presents biochemical data on the common edible land snail Helix aspersa maxima, a model organism for ecotoxicological purposes, which has however been poorly investigated from a biomineralization viewpoint. The shell matrix of this species was extracted and analyzed biochemically for functional in vitro inhibition assay, for amino acid and monosaccharides composition…

0106 biological sciencesBiomineralizationPulmonate snailPhysiology01 natural sciencesBiochemistryMineralization (biology)chemistry.chemical_compoundX-Ray DiffractionTandem Mass SpectrometryElectrophoresis Gel Two-DimensionalHaliotisAmino AcidsComputingMilieux_MISCELLANEOUSchemistry.chemical_classification0303 health sciencesEcologyMonosaccharidesLand snailImmunogold labellingImmunohistochemistryAmino acidBiochemistryElectrophoresis Polyacrylamide GelTerrestrial snail ; biomineralization ; shell ; aragonite ; crossed-lamellar ; protein ; immunogold ; gel electrophoresisFrancefood.ingredientBiology010603 evolutionary biologyCalcium Carbonate03 medical and health sciencesfoodSpecies SpecificityAnimal ShellsShellAnimals14. Life underwater[SDV.IB.BIO]Life Sciences [q-bio]/Bioengineering/BiomaterialsMolecular Biology030304 developmental biologyHelix SnailsProteinsCrossed-lamellarbiology.organism_classification[ SDV.IB.BIO ] Life Sciences [q-bio]/Bioengineering/BiomaterialsGel electrophoresis[SDV.BA.ZI]Life Sciences [q-bio]/Animal biology/Invertebrate ZoologyCalcium carbonatechemistryMicroscopy Electron ScanningBiomineralizationPinctadaComparative biochemistry and physiology. Part B, Biochemistrymolecular biology
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Shell repair process in the green ormer Haliotis tuberculata: a histological and microstructural study.

2008

In the present paper, juvenile and adult shells of the green ormer Haliotis tuberculata ('Oreille de Saint-Pierre') were perforated in a zone close to the shell edge and the shell repair process was followed at two levels: (1) by observing the histology of the calcifying mantle in the repair zone and (2) by analyzing with SEM the microstructure of the shell repair zone. Histological data clearly show the presence of calcium carbonate granules into the connective tissues, but not in the epithelial cells. This suggests that calcium carbonate granules are synthesized by sub-epithelial cells and actively transported through the epithelium to the repair zone, via a process which may be similar t…

0106 biological sciencesBiomineralizationfood.ingredient010603 evolutionary biology01 natural sciencesMineralization (biology)Epithelium03 medical and health scienceschemistry.chemical_compoundfoodMantle epitheliumGreen ormerAnimalsShell repair14. Life underwaterHaliotisPinctadaMantle (mollusc)[SDV.IB.BIO]Life Sciences [q-bio]/Bioengineering/BiomaterialsGastropodMicrostructureComputingMilieux_MISCELLANEOUS030304 developmental biology0303 health sciencesWound HealingbiologyCell BiologyGeneral MedicineAnatomybiology.organism_classification[ SDV.IB.BIO ] Life Sciences [q-bio]/Bioengineering/Biomaterials[SDV.BA.ZI]Life Sciences [q-bio]/Animal biology/Invertebrate ZoologyKineticsCalcium carbonatechemistryBiophysicsMicroscopy Electron ScanningEastern oysterCalcium carbonateDevelopmental BiologyPinctadaBiomineralization
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Differential Effect of Plant Lipids on Membrane Organization

2015

SPE IPM; International audience; The high diversity of the plant lipid mixture raises the question of their respective involvement in the definition of membrane organization. This is particularly the case for plant plasma membrane, which is enriched in specific lipids, such as free and conjugated forms of phytosterols and typical phytosphingolipids, such as glycosylinositolphosphoceramides. This question was here addressed extensively by characterizing the order level of membrane from vesicles prepared using various plant lipid mixtures and labeled with an environment-sensitive probe. Fluorescence spectroscopy experiments showed that among major phytosterols, campesterol exhibits a stronger…

0106 biological sciencesCampesterolMembrane lipidsBiologyMembrane Reconstitution01 natural sciencesBiochemistry03 medical and health scienceschemistry.chemical_compoundMicroscopic ImagingMembrane fluidity[SPI.GPROC]Engineering Sciences [physics]/Chemical and Process EngineeringMolecular BiologyLipid raft030304 developmental biologySterol0303 health sciencesVesicleCell BiologySphingolipidPhospholipid VesicleGIPCSterolMembranechemistryBiochemistryConjugated Forms of PhytosterolGlycerosphingolipidlipids (amino acids peptides and proteins)Lipid Rafts010606 plant biology & botany
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Nest sites of a strong excavator, the Great Spotted Woodpecker Dendrocopos major, in a primeval forest

2017

In managed forests, birds that create their own breeding holes in trees have limited access to substrates in which they can excavate. Therefore, nest site use in these forests possibly reflects availability of substrates more than species preferences. We analysed data on nest sites of Great Spotted Woodpeckers Dendrocopos major collected during 1987–2013 in the strictly protected part of Białowieża National Park in East Poland. The woodpeckers excavated breeding holes in 11 tree species, but species used in individual habitats varied greatly: Alder Alnus glutinosa was almost the only species used in the riverine forest; Common Aspen Populus tremula, Common Hornbeam Carpinus betulus and Pedu…

0106 biological sciencesCarpinus betulusgeographygeography.geographical_feature_categorybiologyEcology010604 marine biology & hydrobiologyScots pineWoodpeckertree holesbiology.organism_classificationOld-growth forest010603 evolutionary biology01 natural sciencesprimeval forestQuercus roburAlnus glutinosaNestDendrocopos majornest site usenest site choicewood decayhabitat occupancyAnimal Science and ZoologyEcology Evolution Behavior and SystematicsArdea
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Effect of pulp cell number and assimilate availability on dry matter accumulation rate in a banana fruit (Musa sp. AAA group 'Grande Naine' (Cavendis…

2001

Fruit position on the bunch (inflorescence) is an important part of variability in banana fruit weight at harvest, as fruits at the bottom of the bunch (distal fruits) are approx. 40% smaller than those at the top (proximal fruits). In this study, the respective roles of cell number and cell filling rate in the development of pulp dry weight are estimated. To this end, the source/sink ratio in the plant was altered at different stages of fruit development. Leaf shading (reducing resource availability), bunch bagging (increasing sink activity by increasing fruit temperature), and bunch trimming (decreasing sink size by fruit pruning), applied once cell division had finished, showed that the …

0106 biological sciencesCell numberFruit developmentF62 - Physiologie végétale - Croissance et développementPlant ScienceBiology01 natural sciencesSink (geography)[SDV.BV.BOT] Life Sciences [q-bio]/Vegetal Biology/Botanics03 medical and health sciencesFilling rateCelluleDry weightstomatognathic systemBananeDry matterPulpe de fruitshttp://aims.fao.org/aos/agrovoc/c_3126Croissancehttp://aims.fao.org/aos/agrovoc/c_4993ComputingMilieux_MISCELLANEOUS030304 developmental biology2. Zero hunger0303 health sciencesgeographygeography.geographical_feature_categoryhttp://aims.fao.org/aos/agrovoc/c_1418BANANIERfungifood and beveragesMusaECOPHYSIOLOGIE[SDV.BV.BOT]Life Sciences [q-bio]/Vegetal Biology/BotanicsTempératurehttp://aims.fao.org/aos/agrovoc/c_921Relation source puitsstomatognathic diseaseshttp://aims.fao.org/aos/agrovoc/c_3394http://aims.fao.org/aos/agrovoc/c_7657AgronomyInflorescencehttp://aims.fao.org/aos/agrovoc/c_806http://aims.fao.org/aos/agrovoc/c_34110Shading010606 plant biology & botanyDéveloppement biologique
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Cytosolic pH regulates root water transport during anoxic stress through gating of aquaporins.

2003

Flooding of soils results in acute oxygen deprivation (anoxia) of plant roots during winter in temperate latitudes, or after irrigation1, and is a major problem for agriculture. One early response of plants to anoxia and other environmental stresses is downregulation of water uptake due to inhibition of the water permeability (hydraulic conductivity) of roots (Lpr)2,3,4,5. Root water uptake is mediated largely by water channel proteins (aquaporins) of the plasma membrane intrinsic protein (PIP) subgroup6,7,8. These aquaporins may mediate stress-induced inhibition of Lpr2,4,9 but the mechanisms involved are unknown. Here we delineate the whole-root and cell bases for inhibition of water upta…

0106 biological sciencesCell signalingMagnetic Resonance SpectroscopyCell RespirationArabidopsisAquaporin[SDV.BC]Life Sciences [q-bio]/Cellular BiologyGatingBiologyAquaporins01 natural sciencesPlant RootsPermeability03 medical and health sciencesXenopus laevisCytosolAnimalsComputingMilieux_MISCELLANEOUS030304 developmental biologyPlant Diseases0303 health sciencesMultidisciplinaryWater transportMajor intrinsic proteinsWaterBiological TransportHydrogen-Ion Concentration6. Clean waterOxygenCytosolBiochemistryBiophysicsOocytesMembrane channelSignal transductionProtonsABSORPTION HYDRIQUEIon Channel Gating010606 plant biology & botanyNature
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