Search results for "ddc:540"

showing 10 items of 212 documents

Quantitative Proteomics Reveals Changes Induced by TIMP-3 on Cell Membrane Composition and Novel Metalloprotease Substrates

2021

Ectodomain shedding is a key mechanism of several biological processes, including cell-communication. Disintegrin and metalloproteinases (ADAMs), together with the membrane-type matrix metalloproteinases, play a pivotal role in shedding transmembrane proteins. Aberrant shedding is associated to several pathological conditions, including arthritis. Tissue inhibitor of metalloproteases 3 (TIMP-3), an endogenous inhibitor of ADAMs and matrix metalloproteases (MMPs), has been proven to be beneficial in such diseases. Thus, strategies to increase TIMP-3 bioavailability in the tissue have been sought for development of therapeutics. Nevertheless, high levels of TIMP-3 may lead to mechanism-based …

0301 basic medicineProteomicsADAM15ProteomeCellMatrix metalloproteinaseMass SpectrometryCell membranelcsh:Chemistryanalysis [Proteome]lcsh:QH301-705.5proteomicSpectroscopybiologyChemistrytissue inhibitor of metalloproteases 3 (TIMP-3)General MedicineTransmembrane proteinComputer Science ApplicationsCell biologymedicine.anatomical_structureEctodomainddc:540TIMP3 protein humanmetalloproteinaseectodomain sheddingmetabolism [Tissue Inhibitor of Metalloproteinase-3]Quantitative proteomicsADAM15 protein humanchemistry [Cell Membrane]Catalysismetabolism [Cell Membrane]ArticlemetalloproteinasesInorganic Chemistry03 medical and health sciencestissue inhibitor of metalloproteases 3 (TIMP-3).medicineDisintegrinHumansPhysical and Theoretical ChemistryMolecular BiologyTissue Inhibitor of Metalloproteinase-3030102 biochemistry & molecular biologyOrganic ChemistryCell MembraneMembrane Proteinsmetabolism [Proteome]ADAM Proteins030104 developmental biologyHEK293 Cellslcsh:Biology (General)lcsh:QD1-999metabolism [ADAM Proteins]biology.proteinmetabolism [Membrane Proteins]International Journal of Molecular Sciences
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Uncoupling of dynamin polymerization and GTPase activity revealed by the conformation-specific nanobody dynab

2017

Dynamin is a large GTPase that forms a helical collar at the neck of endocytic pits, and catalyzes membrane fission (Schmid and Frolov, 2011; Ferguson and De Camilli, 2012). Dynamin fission reaction is strictly dependent on GTP hydrolysis, but how fission is mediated is still debated (Antonny et al., 2016): GTP energy could be spent in membrane constriction required for fission, or in disassembly of the dynamin polymer to trigger fission. To follow dynamin GTP hydrolysis at endocytic pits, we generated a conformation-specific nanobody called dynab, that binds preferentially to the GTP hydrolytic state of dynamin-1. Dynab allowed us to follow the GTPase activity of dynamin-1 in real-time. We…

0301 basic medicineendocrine systemGTP'MouseQH301-705.5FissionScienceEndocytic cycleGTPasemacromolecular substancesEndocytosisGeneral Biochemistry Genetics and Molecular BiologyGTP PhosphohydrolasesPolymerization03 medical and health sciences0302 clinical medicineMembrane fissiondynaminendocytosisHumansBiology (General)Dynamin IDynaminGeneral Immunology and MicrobiologyChemistryGeneral Neuroscienceconformational-specific nanobodyHydrolysisQRGeneral MedicineCell BiologyFibroblastsSingle-Domain Antibodiesenzyme030104 developmental biologyMembraneddc:540BiophysicsMedicineGuanosine Triphosphatebiological phenomena cell phenomena and immunitycell biology conformational-specific nanobody dynamin endocytosis enzyme human mouse030217 neurology & neurosurgeryResearch ArticleHumaneLife
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European contribution to the study of ROS : A summary of the findings and prospects for the future from the COST action BM1203 (EU-ROS)

2017

WOS: 000410470000009

0301 basic medicinereactive oxygen species ; reactive nitrogen species ; redox signaling ; oxidative stress ; antioxidants ; redox therapeuticsRedox signalingInternational CooperationSMOOTH-MUSCLE-CELLS[SDV]Life Sciences [q-bio]Clinical BiochemistryISCHEMIA-REPERFUSION INJURYReviewddc:616.07Bioinformaticsmedicine.disease_causeBiochemistryAntioxidants0302 clinical medicineENDOPLASMIC-RETICULUM STRESSCost actionlcsh:QH301-705.5ComputingMilieux_MISCELLANEOUSmedia_commonlcsh:R5-920Redox therapeuticsReactive nitrogen species3. Good healthVariety (cybernetics)MANGANESE SUPEROXIDE-DISMUTASECHRONIC GRANULOMATOUS-DISEASERisk analysis (engineering)ddc:540lcsh:Medicine (General)Oxidation-ReductionSignal TransductionSocieties ScientificPULMONARY ARTERIAL-HYPERTENSIONMedicinaEstrès oxidatiuBiology03 medical and health sciencesAntioxidants ; Oxidative Stress ; Reactive Nitrogen Species ; Reactive Oxygen Species ; Redox Signaling ; Redox TherapeuticsJournal Articlemedicinemedia_common.cataloged_instanceAnimalsHumans[CHIM]Chemical SciencesEuropean UnionEuropean unionNITRIC-OXIDE SYNTHASETANDEM MASS-SPECTROMETRYMolecular BiologyMITOCHONDRIAL OXIDATIVE STRESSGROWTH-FACTOR-BETAOrganic ChemistryDisease progressionBiology and Life SciencesOxidation reductionManganese Superoxide Dismutase030104 developmental biologylcsh:Biology (General)Oxidative stressReactive oxygen species030217 neurology & neurosurgeryOxidative stressRedox biology
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Asymmetric synthesis of 3,3′-pyrrolidinyl-dispirooxindoles via a one-pot organocatalytic Mannich/deprotection/aza-Michael sequence

2016

Chemical communications 52, 2249-2252 (2016). doi:10.1039/C5CC10057G

3'-pyrrolidinyl-spirooxindole3010405 organic chemistryChemistryMannich/deprotection/aza-Michael sequenceMetals and AlloysEnantioselective synthesisSequence (biology)General Chemistrychemistry010402 general chemistry54001 natural sciencesCombinatorial chemistryCatalysis0104 chemical sciencesSurfaces Coatings and FilmsElectronic Optical and Magnetic MaterialsCatalysisStereocenterddc:540Materials ChemistryCeramics and CompositesStereoselectivityta116
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Nanoparticles in the Biological Context: Surface Morphology and Protein Corona Formation

2020

Small 16(39), 2002162 (2020). doi:10.1002/smll.202002162

540 Chemistry and allied sciencesMaterials scienceMorphology (linguistics)Shell (structure)NanoparticleContext (language use)Protein Corona02 engineering and technology010402 general chemistry01 natural sciencesMass SpectrometryBiomaterialsColloidCorona (optical phenomenon)General Materials ScienceBackground subtractionBlood ProteinsGeneral Chemistry021001 nanoscience & nanotechnology5400104 chemical sciencesChemical physics540 Chemieddc:540NanoparticlesProtein Corona0210 nano-technologyBiotechnology
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The Coordination of Uranyl in Water: A Combined Quantum Chemical and Molecular Simulation Study

2005

The coordination environment of uranyl in water has been studied using a combined quantum mechanical and molecular dynamics approach. Multiconfigurational wave function calculations have been performed to generate pair potentials between uranyl and water. The quantum chemically determined energies have been used to fit parameters in a polarizable force field with an added charge transfer term. Molecular dynamics simulations have been performed for the uranyl ion and up to 400 water molecules. The results show a uranyl ion with five water molecules coordinated in the equatorial plane. The U-O(H(2)O) distance is 2.40 A, which is close to the experimental estimates. A second coordination shell…

Ab initioMolecular simulationBiochemistryCatalysisIonMolecular dynamicschemistry.chemical_compoundColloid and Surface ChemistryAb initio quantum chemistry methodsComputational chemistryComputer SimulationPhysics::Chemical PhysicsQuantum chemicalHydrogen bondSolvationWaterGeneral ChemistryGeneral MedicineUranylSolvation shellchemistryModels ChemicalChemical physicsddc:540Quantum TheoryUranium
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Measurement of acoustic attenuation in South Pole ice

2010

Using the South Pole Acoustic Test Setup (SPATS) and a retrievable transmitter deployed in holes drilled for the IceCube experiment, we have measured the attenuation of acoustic signals by South Pole ice at depths between 190 m and 500 m. Three data sets, using different acoustic sources, have been analyzed and give consistent results. The method with the smallest systematic uncertainties yields an amplitude attenuation coefficient alpha = 3.20 \pm 0.57 km^(-1) between 10 and 30 kHz, considerably larger than previous theoretical estimates. Expressed as an attenuation length, the analyses give a consistent result for lambda = 1/alpha of ~1/300 m with 20% uncertainty. No significant depth or …

Acoustic attenuation; Acoustics; Ice; Neutrino astronomy; South Pole[PHYS.ASTR.HE]Physics [physics]/Astrophysics [astro-ph]/High Energy Astrophysical Phenomena [astro-ph.HE]010504 meteorology & atmospheric sciences[SDU.ASTR.CO]Sciences of the Universe [physics]/Astrophysics [astro-ph]/Cosmology and Extra-Galactic Astrophysics [astro-ph.CO]iceFOS: Physical sciencesAetiology screening and detection [ONCOL 5]Lambda01 natural sciencesneutrino astronomy[PHYS.ASTR.CO]Physics [physics]/Astrophysics [astro-ph]/Cosmology and Extra-Galactic Astrophysics [astro-ph.CO]OpticsSpectrum0103 physical sciencesacousticsInstrumentation and Methods for Astrophysics (astro-ph.IM)0105 earth and related environmental sciencesPhysicsSouth Pole010308 nuclear & particles physicsbusiness.industryAttenuation[SDU.ASTR.HE]Sciences of the Universe [physics]/Astrophysics [astro-ph]/High Energy Astrophysical Phenomena [astro-ph.HE]TransmitterAttenuation lengthAstronomy and AstrophysicsGeodesy004AmplitudeAttenuation coefficientddc:540NeutrinoAstrophysics - Instrumentation and Methods for AstrophysicsbusinessAcoustic attenuationinfo:eu-repo/classification/ddc/004acoustic attenuation
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Experimental investigation of anion-π interactions : Applications and biochemical relevance

2015

Chemical communications 52(9), 1778 - 1795(2016). doi:10.1039/C5CC09072E

Anionsanion-pi interactionsSolid-stateChemieNanotechnology010402 general chemistry01 natural sciencesCatalysisIonGas phasekemialliset sidoksetTime frameMaterials Chemistrysupramolekulaarinen kemiaanioni-π-vuorovaikutus010405 organic chemistryChemistryIntermolecular forceMetals and AlloysGeneral Chemistry5400104 chemical sciencesSurfaces Coatings and FilmsElectronic Optical and Magnetic Materialsintermolecular forcesnon-covalent interactionsChemical physicsddc:540Ceramics and Composites
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Asymmetric Synthesis of Tetrahydrobenzofurans and Annulated Dihydropyrans via Cooperative One-Pot Organo- and Silver-Catalysis

2016

Synthesis : journal of synthetic organic chemistry 48(19), 3207-3216(2016). doi:10.1055/s-0035-1561468

Annulation010405 organic chemistryChemistryOrganic ChemistryOne-pot synthesisEnantioselective synthesisSquaramide540010402 general chemistry01 natural sciencesCombinatorial chemistryCatalysis0104 chemical sciencesCatalysisOrganocatalysisddc:540Michael reactionOrganic chemistryHydroalkoxylationSynthesis
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Ion-Pairing Effects in the Self-Assembly of a Fluorescent Pseudorotaxane

2006

Herein we report on the self-assembly, in a low polarity solvent, of a pseudorotaxane species comprising binaphthyl-26-crown-8 (BN26C8) as the macrocyclic host and anthracenyl-benzylammonium as the threadlike positively charged guest (ABH+). Absorption and luminescence data reveal a very efficient energy transfer process occurring from the binaphthyl to the anthracene singlet excited states. The self-assembly is highly dependent on the nature of the counteranion confirming the crucial role played by it in the competition between the self-assembly process and the formation of ion pairs (ABH+X-). This behavior can be readily evidenced in dilute solutions from the analysis of the luminescence …

AnthraceneIon pairsRotaxanesPhotochemistryStereochemistryOrganic ChemistrySupramolecular chemistrySelf-assemblychemistry.chemical_compoundCrystallographyTRISPHATMolecular recognitionchemistryHexafluorophosphateddc:540Proton NMRSinglet stateMolecular recognitionPhysical and Theoretical ChemistryLuminescenceEuropean Journal of Organic Chemistry
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