Search results for "divergence"
showing 10 items of 257 documents
Recolonization after habitat restoration leads to decreased genetic variation in populations of a terrestrial orchid
2012
Colonization is crucial to habitat restoration projects that rely on the spontaneous regeneration of the original vegetation. However, as a previously declining plant species spreads again, the likelihood of founder effects increases through recurrent population founding and associated serial bottlenecks. We related Amplified Fragment Length Polymorphism markers genetic variation and fitness to colonization history for all extant populations of the outcrossing terrestrial orchid Dactylorhiza incarnata in an isolated coastal dune complex. Around 1970, D. incarnata suffered a severe bottleneck yet ultimately persisted and gradually spread throughout the spatially segregated dune slacks, aided…
The Role of the Philosophy of Technology in French-Language Studies of Video Games
2018
This chapter analyzes the role played by the philosophies of technology in the development of French-language studies devoted to video games. This intellectual tradition is well represented within the field, in a variety of forms which are characteristic of the main trends in the French-language philosophy of technology. The field of games studies allows comparing and contrasting these different approaches to a single object. I analyze the specificities of the French-language field, its theoretical options, and the role played by the philosophy of technology in its points of divergence from the dominant trends in game studies. Four studies located at the intersection between philosophy of t…
Italian Odonates in the Pandora’s Box: A Comprehensive DNA Barcoding Inventory Shows Taxonomic Warnings at the Holarctic Scale
2020
AbstractThe Odonata are considered among the most endangered freshwater faunal taxa. Their DNA-based monitoring relies on validated reference datasets that are often lacking or do not cover important biogeographical centres of diversification. This study presents the results of a DNA barcoding campaign on Odonata, based on the standard 658 bp 5’ end region of the mitochondrial COI gene, involving the collection of 812 specimens (409 of which barcoded) from peninsular Italy and its main islands (328 localities), belonging to all the 88 species (31 Zygoptera and 57 Anisoptera) known from the country. Additional BOLD and GenBank data from Holarctic samples expanded the dataset to 1294 DNA barc…
Wages and prices in early Catalan industrialisation
2014
Catalonia was the only Mediterranean region among the early followers of the British Industrial Revolution in the second third of the nineteenth century. The roots of this industrialisation process can be traced back to the seventeenth and eighteenth centuries when the Catalan economy became successfully integrated in international trade and the region enjoyed an intensification of its agrarian and proto-industrial activities. These capitalist developments were subsequently reinforced by a successful printed calico manufacturing business concentrated in the city of Barcelona. Although the factory system was largely adopted by the cotton industry in the 1840s, the diffusion of the spinning j…
A non-linear optimization procedure to estimate distances and instantaneous substitution rate matrices under the GTR model.
2006
Abstract Motivation: The general-time-reversible (GTR) model is one of the most popular models of nucleotide substitution because it constitutes a good trade-off between mathematical tractability and biological reality. However, when it is applied for inferring evolutionary distances and/or instantaneous rate matrices, the GTR model seems more prone to inapplicability than more restrictive time-reversible models. Although it has been previously noted that the causes for intractability are caused by the impossibility of computing the logarithm of a matrix characterised by negative eigenvalues, the issue has not been investigated further. Results: Here, we formally characterize the mathematic…
Kullback-Leibler distance as a measure of the information filtered from multivariate data
2007
We show that the Kullback-Leibler distance is a good measure of the statistical uncertainty of correlation matrices estimated by using a finite set of data. For correlation matrices of multivariate Gaussian variables we analytically determine the expected values of the Kullback-Leibler distance of a sample correlation matrix from a reference model and we show that the expected values are known also when the specific model is unknown. We propose to make use of the Kullback-Leibler distance to estimate the information extracted from a correlation matrix by correlation filtering procedures. We also show how to use this distance to measure the stability of filtering procedures with respect to s…
Molecular evidence for phylogenetic relationships among buntings and American sparrows (Emberizidae)
2001
To help clarify controversial phylogenetic relationships within the family Emberizidae, we sequenced 1238 bp of mitochondrial DNA from the cytochrome b gene and a flanking portion of ND5. Although the longspurs (Calcarius) and the snow buntings (Plectrophenax) have been grouped with the Old World buntings (Emberiza) in traditional classifications, our molecular phylogenies constructed with maximum likelihood and maximum parsimony place these general basal to a clade in which the Old World buntings and North American sparrows are sister groups. Contrary to the hypothesis that the radiation within Emberiza is recent following a westward expansion of emberizid stock into Eurasia from North Ame…
A generalized predictive criterion for model selection
2002
Given a random sample from some unknown model belonging to a finite class of parametric models, assume that the estimate of the density of a future observation is of interest San Martini & Spezzaferri (1984) proposed for this problem a predictive criterion based on the logarithmic utility function. The present authors investigate a generalization of this criterion that uses as a loss function an element of the class of α-divergences discussed by Ali & Silvey (1966) and Csiszar (1967). They also discuss briefly the case in which the class of models considered is not exhaustive. Un critere de prevision generalise pour la selection de modeles Supposons que l'on cherche a estimer la densite d'u…
Reduced Reference Mesh Visual Quality Assessment Based on Convolutional Neural Network
2018
3D meshes are usually affected by various visual distortions during their transmission and geometric processing. In this paper we propose a reduced reference method for mesh visual quality assessment. The method compares features extracted from the distorted mesh and the original one using a convolutional neural network in order to estimate the visual quality score. The perceptual distance between two meshes is computed as the Kullback-Leibler divergence between the two sets of feature vectors. Experimental results from two subjective databases (LIRIS masking database and LIRIS/EPFL general purpose database) and comparisons with seven objective metrics cited in the state-of-the-art demonstr…
Korn inequality on irregular domains
2013
Abstract In this paper, we study the weighted Korn inequality on some irregular domains, e.g., s-John domains and domains satisfying quasihyperbolic boundary conditions. Examples regarding sharpness of the Korn inequality on these domains are presented. Moreover, we show that Korn inequalities imply certain Poincare inequality.