Search results for "dna"
showing 10 items of 6803 documents
Looking for Hidden Enemies of Metabarcoding: Species Composition, Habitat and Management Can Strongly Influence DNA Extraction while Examining Grassl…
2021
Despite the raising preoccupation, the critical question of how the plant community is composed belowground still remains unresolved, particularly for the conservation priority types of vegetation. The usefulness of metabarcoding analysis of the belowground parts of the plant community is subjected to a considerable bias, that often impedes detection of all species in a sample due to insufficient DNA quality or quantity. In the presented study we have attempted to find environmental factors that determine the amount and quality of DNA extracted from total plant tissue from above- and belowground samples (1,000 and 10,000 cm2). We analyzed the influence of land use intensity, soil properties…
Subcellular localization and purification of a p-hydroxyphenylpyruvate dioxygenase from cultured carrot cells and characterization of the correspondi…
1997
p-Hydroxyphenylpyruvate dioxygenase catalyses the transformation of p-hydroxyphenylpyruvate into homogentisate. In plants this enzyme has a crucial role because homogentisate is the aromatic precursor of all prenylquinones. Furthermore this enzyme was recently identified as the molecular target for new families of potent herbicides. In this study we examine precisely the localization of p-hydroxyphenylpyruvate dioxygenase activity within carrot cells. Our results provide evidence that, in cultured carrot cells, p-hydroxyphenylpyruvate dioxygenase is associated with the cytosol. Purification and SDS/PAGE analysis of this enzyme revealed that its activity is associated with a polypeptide of 4…
Nested core collections maximizing genetic diversity in Arabidopsis thaliana.
2004
Summary The successful exploitation of natural genetic diversity requires a basic knowledge of the extent of the variation present in a species. To study natural variation in Arabidopsis thaliana, we defined nested core collections maximizing the diversity present among a worldwide set of 265 accessions. The core collections were generated based on DNA sequence data from a limited number of fragments evenly distributed in the genome and were shown to successfully capture the molecular diversity in other loci as well as the morphological diversity. The core collections are available to the scientific community and thus provide an important resource for the study of genetic variation and its …
Degradation of sexual reproduction in Veronica filiformis after introduction to Europe
2011
Abstract Background Baker’s law predicts that self-incompatible plant species are generally poor colonizers because their mating system requires a high diversity of genetically differentiated individuals and thus self-compatibility should develop after long-distance dispersal. However, cases like the introduction of the self-incompatible Veronica filiformis (Plantaginaceae) to Europe constitute an often overlooked alternative to this rule. This species was introduced from subalpine areas of the Pontic-Caucasian Mountains and colonized many parts of Central and Western Europe in the last century, apparently without producing seeds. To investigate the consequences of the absence of sexual rep…
The dominance of the herbicide resistance cost in several Arabidopsis thaliana mutant lines
2004
Abstract Resistance evolution depends upon the balance between advantage and disadvantage (cost) conferred in treated and untreated areas. By analyzing morphological characters and simple fitness components, the cost associated with each of eight herbicide resistance alleles (acetolactate synthase, cellulose synthase, and auxin-induced target genes) was studied in the model plant Arabidopsis thaliana. The use of allele-specific PCR to discriminate between heterozygous and homozygous plants was used to provide insights into the dominance of the resistance cost, a parameter rarely described. Morphological characters appear more sensitive than fitness (seed production) because 6 vs. 4 differen…
Revision of the west african species of scyllarus fabricius, 1775 (Decapoda: Achelata: Scyllaridae), with the description of three phyllosoma stages …
2020
West African species of Scyllarus Fabricius, 1775 (Achelata, Scyllaridae) are poorly known, mostly due to the difficulties of sampling Eastern Atlantic tropical waters. Recent expeditions carried out by the Universidad de Cádiz and the Instituto Español de Oceanografía collected phyllosoma larvae from Cape Verde Islands (CVI) and fresh Scyllarus adults from continental West Africa. Larval stages VII, IX, and X (final stage) of S. caparti Holthuis, 1952 are analyzed using DNA barcoding methods and described for the first time. A comprehensive identification key is provided, summarizing our current knowledge on the phyllosomas of Scyllarus. Together with a revision of museum collections, the …
Estimating cod egg developmental stage based on DNA concentration
2017
Abstract Pelagic egg surveys are commonly used to map Atlantic cod spawning areas in the northeastern Atlantic. However, a sampling location may not necessarily indicate a spawning location, because more developed eggs may have drifted long distances in coastal currents. Newly spawned eggs have only a few embryonic cells, whereas eggs in later developmental stages have progressively larger numbers of cells and hence greater amounts of DNA. The progression through developmental stages largely depends on temperature, which influences cell division and growth. Preservation of the eggs for later analysis presents logistical dilemmas. Preservation in ethanol is suitable for DNA extraction but ob…
Mitochondrial phylogeography of the edible dormouse (Glis glis) in the western Palearctic region
2010
International audience; This study describes in detail the phylogeoraphic pattern Of the edible dormouse (Glis glis) a European rodent With pronounced hibernating behavior We Used sequences of 831 base pairs of the mitochondrial DNA cytochrome-b gene from 130 edible dormice collected at 43 localities (throughout Its distribution. Our results reveal presence of 3 main haplogroups: Sicilian, South Italian (restricted to the Calabrian region) (a widespread lineage corresponding to all remaining western, central. and eastern European populations). Examination of paleontological data confirms refugial regions for G,Its in the 3 Mediterranean peninsulas, although overall low genetic diversity is …
Combining environmental DNA and species distribution modeling to evaluate reintroduction success of a freshwater fish
2019
Active species reintroduction is an important conservation tool when aiming for the restoration of biological communities and ecosystems. The effective monitoring of reintroduction success is a crucial factor in this process. Here, we used a combination of environmental DNA (eDNA) techniques and species distribution models (SDMs) to evaluate the success of recent reintroductions of the freshwater fish Alburnoides bipunctatus in central Germany. We built SDMs without and with eDNA presence data to locate further suitable reintroduction sites and potentially overlooked populations of the species. We successfully detected eDNA of A. bipunctatus at all reintroduction sites, as well as several a…
Genetic variability in Peregrine falcon populations of the Western Palaearctic region
2018
We analyzed variation in ten polymorphic microsatellites and a portion of cytochrome b mitochondrial DNA in 4 populations of the Peregrine falcon (Falco peregrinus). living in northern and southern Italy. Spain and Czech Republic to assess species diversity in the poorly investigated Western Palearctic region. The Spanish population lives in the contact zone between F. peregrinus peregrinus and F. p. brookei. both the northern Italian and the Czech populations live within the range of F. p. peregrinus and the southern Italian is within the F. p. brookei. We added to our cytochrome b sequence dataset comprising 81 samples. previously published mitochondrial DNA sequences (n = 31) of English …