Search results for "fAFLP"
showing 4 items of 4 documents
Molecular diagnostic tools for the detection and characterization of Phoma tracheiphila
2011
In the recent years PCR-based techniques for the identification and detection of Phoma tracheiphila, the causal agent of citrus mal secco disease, have been evaluated aiming to provide tools for biological and epidemiological studies. A wide collection of P. tracheiphila strains was used to evaluate and validate diagnostic protocols and a fAFLP method for fungal characterization. Conventional and real-time PCR protocols were successfully tested for the specific identification of P. tracheiphila and its detection in planta. A further improvement of the real-time PCR protocol and the DNA extraction methods allowed the quantification of the fungus both from naturally infected and artificially …
A polyphasic approach to the identification of ochratoxin A-producing black Aspergillus isolates from vineyards in Sicily.
2008
Aspergillus strains belonging to section Nigri isolated during a two year survey in eight Sicilian vineyards located on the slopes of Mount Etna (Sicily, Italy) were analysed analyzed in order to characterize species responsible for ochratoxin A (OTA) contamination of grapes. The polyphasic approach permitted analysis of biodiversity of Aspergillus isolates in relation to their morphology, ochratoxigenicity and genetic variability. We assessed OTA production by A. carbonarius, A. niger, A. tubingensis and A. japonicus using an enzyme-linked immunosorbent assay. A. carbonarius isolates were the strongest OTA producers. A subset of 66 representative strains was selected for further DNA-based …
Characterization of Alternaria alternata Isolates from Tangerine Hybrids Affected by Brown Spot in Italy
2011
Alternaria brown spot, caused by Alternaria alternata, is the most important disease of tangerines and their hybrids worldwide, including Italy. The disease represents, for some susceptible citrus cultivar, a limiting factor in profitable cultivation. The results of the characterization of A. alternata isolates obtained from lesions on leaves and fruits of Fortune, Nova and Winola hybrids and Valencia sweet orange, collected in two groves located in Calabria and Sicily, is reported. An endopolygalacturonase gene (endoPG) was sequenced from five representative strains and a phylogenetic tree based on endoPG sequence data of Italian isolates and those of citrus associated Alternaria species d…
Clonal populations of Clavibacter michiganensis subsp michiganensis are responsible for the outbreaks of bacterial canker in greenhouse tomatoes in I…
2015
Clavibacter michiganensis subsp. michiganensis (Cmm) strains, collected in greenhouses from 17 farms during tomato bacterial canker outbreaks occurring between 2005 and 2008 in Sicily, were analysed by a multiphasic approach. Population studies were conducted to investigate the possible sources of inocula. Cmm strains were characterized by PCR assays targeting virulence genes, fingerprinting techniques, metabolic profiles and virulence. These strains were comparatively analysed with Cmm strains isolated in other parts of Italy over a period of 15 years. Chromosomal genes encoding virulence determinants tomA, ppaA, chpC, and the plasmid-encoded genes pat-1 and celA were detected by PCR in al…