Search results for "functions"

showing 10 items of 1066 documents

Evidence of a highly complex phylogeographic structure on a specialist river bird species, the dipper (Cinclus cinclus)

2008

This study details the phylogeographic pattern of the white-throated dipper (Cinclus cinclus), a Palearctic, temperate, passerine bird that is exclusively associated with flowing water. Our results reveal a complex phylogeographic structure with at least five distinct lineages for the Western Palearctic region. As for many species of the Western Palearctic fauna and flora, this genetic structure is probably linked to the isolation of populations in different southern refuges during glacial periods. Furthermore, the isolation of populations in Scandinavia and/or Eastern regions, but also in Morocco and probably in Corsica, was accentuated by ecological and biogeographic barriers during Quate…

0106 biological sciencesFauna[SDV]Life Sciences [q-bio]Settore BIO/05 - ZoologiaSubspecies01 natural sciencesPHYLOGEOGRAPHYIce ageGlacial periodPasseriformesPhylogenyComputingMilieux_MISCELLANEOUS0303 health scienceseducation.field_of_studyLikelihood FunctionsGLACIAL REFUGEbiologyGeographyEcologyGLACIATION QUATERNAIRECytochromes bMitochondriaEuropeGenes MitochondrialInterglacialCinclus cinclus; Glacial refuges; Mitochondrial DNA; Phylogeography; Quaternary glaciations; TaxonomyMITOCHONDRIAL DNAGenetic MarkersCinclus cincluPopulation010603 evolutionary biologyDNA MitochondrialEvolution Molecular03 medical and health sciencesGeneticsAnimalseducationMolecular BiologyEcology Evolution Behavior and Systematics030304 developmental biology[SDV.GEN]Life Sciences [q-bio]/GeneticsGenetic VariationSequence Analysis DNA15. Life on landTAXONOMYbiology.organism_classificationPhylogeographyGenetics PopulationCINCLUS CINCLUSCinclus cinclusQUATERNARY GLACIATIONSequence Alignment
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Larval intraspecific competition for food in the European grapevine moth Lobesia botrana.

2014

AbstractEffective pest management with lower amounts of pesticides relies on accurate prediction of insect pest growth rates. Knowledge of the factors governing this trait and the resulting fitness of individuals is thus necessary to refine predictions and make suitable decisions in crop protection. The European grapevine moth, Lobesia botrana, the major pest of grapes in Europe, is responsible for huge economic losses. Larvae very rarely leave the grape bunch on which they were oviposited and thus cannot avoid intraspecific competition. In this study, we determined the impact of intraspecific competition during the larval stage on development and adult fitness in this species. This was tes…

0106 biological sciencesIntegrated pest managementCompetitive BehaviorTime FactorsOvipositionmedia_common.quotation_subjectintraspecific competitionZoologyMothsLobesia botrana010603 evolutionary biology01 natural sciencesIntraspecific competitionSpecies Specificity[ SDV.EE.IEO ] Life Sciences [q-bio]/Ecology environment/SymbiosisAnimalsVitislife history traitsmedia_commonlarval crowdingPopulation DensityAnalysis of VarianceLikelihood FunctionsLarva[ SDE.BE ] Environmental Sciences/Biodiversity and EcologybiologyEcologyfungiLongevityFeeding BehaviorGeneral MedicineFecunditybiology.organism_classificationPupaLepidoptera010602 entomologycompensatory mortalityCrowdingFertilityLarvaInsect ScienceRegression Analysisgrowth rateFranceGenetic FitnessPEST analysis[SDE.BE]Environmental Sciences/Biodiversity and EcologyAgronomy and Crop Science[SDV.EE.IEO]Life Sciences [q-bio]/Ecology environment/Symbiosis
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The evolution of sperm morphometry in pheasants

2007

7 pages; International audience; Post-copulatory sexual selection is thought to be a potent evolutionary force driving the diversification of sperm shape and function across species. In birds, insemination and fertilization are separated in time and sperm storage increases the duration of sperm-female interaction and hence the opportunity for sperm competition and cryptic female choice. We performed a comparative study of 24 pheasant species (Phasianidae, Galliformes) to establish the relative importance of sperm competition and the duration of sperm storage for the evolution of sperm morphometry (i.e. size of different sperm traits). We found that sperm size traits were negatively associat…

0106 biological sciencesMale[ SDV.BDLR.RS ] Life Sciences [q-bio]/Reproductive Biology/Sexual reproductionsperm storage duration01 natural sciencessperm competitionSperm heteromorphism[ SDV.EE.IEO ] Life Sciences [q-bio]/Ecology environment/SymbiosisMESH: AnimalsMESH : FemaleMESH : EvolutionGalliformesMESH : Mating Preference Animalcomparative studypheasantsreproductive and urinary physiology0303 health sciencesLikelihood FunctionsMESH : Galliformes[SDV.BID.EVO]Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE]MESH: SpermatozoaMESH: GalliformesAnatomyBiological EvolutionSpermatozoaMESH: Mating Preference AnimalFemale sperm storage[ SDV.BID.EVO ] Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE]Sexual selectionFemaleMESH : Likelihood Functionsendocrine systemMESH : MaleZoologyBiologyInsemination010603 evolutionary biologyPheasantfemale reproductive biology[SDV.BDLR.RS]Life Sciences [q-bio]/Reproductive Biology/Sexual reproductionsperm morphometry03 medical and health sciencesbiology.animalReproductive biologyMESH: EvolutionMESH : SpermatozoaMESH: Cell ShapeAnimalsSperm competitionCell ShapeEcology Evolution Behavior and Systematics030304 developmental biologyurogenital systemMESH : FertilizationMating Preference AnimalSpermMESH: MaleFertilizationMESH: FertilizationMESH: Likelihood FunctionsMESH : AnimalsMESH : Cell ShapeMESH: Female[SDV.EE.IEO]Life Sciences [q-bio]/Ecology environment/Symbiosis
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Phylogenetic evidence for hybrid origins of asexual lineages in an aphid species

2003

International audience; Understanding the mode of origin of asexuality is central to ongoing debates concerning the evolution and maintenance of sexual reproduction in eukaryotes. This is because it has profound consequences for patterns of genetic diversity and ecological adaptability of asexual lineages, hence on the outcome of competition with sexual relatives both in short and longer terms. Among the possible routes to asexuality, hybridization is a very common mechanism in animals and plants. Aphids present frequent transitions from their ancestral reproductive mode (cyclical parthenogenesis) to permanent asexuality, but the mode of origin of asexual lineages is generally not known bec…

0106 biological sciencesMitochondrial DNAHeterozygoteEvolution of sexual reproduction[SDV]Life Sciences [q-bio]Parthenogenesis010603 evolutionary biology01 natural sciencesAsexualityRhopalosiphum padiEvolution Molecular03 medical and health sciencesReproduction AsexualGeneticsAnimalsCluster AnalysisAllele sequence divergenceHybridizationPhylogenyPolymorphism Single-Stranded ConformationalEcology Evolution Behavior and Systematics030304 developmental biologyGeneticsAphidLikelihood Functions0303 health sciencesbiologyPhylogenetic treeModels GeneticParthenogenesisSequence Analysis DNAbiology.organism_classificationNuclear DNASexual reproductionEvolution of sexAphids[SDE]Environmental SciencesHybridization GeneticGeneral Agricultural and Biological SciencesMicrosatellite Repeats
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Efficient estimation of generalized linear latent variable models.

2019

Generalized linear latent variable models (GLLVM) are popular tools for modeling multivariate, correlated responses. Such data are often encountered, for instance, in ecological studies, where presence-absences, counts, or biomass of interacting species are collected from a set of sites. Until very recently, the main challenge in fitting GLLVMs has been the lack of computationally efficient estimation methods. For likelihood based estimation, several closed form approximations for the marginal likelihood of GLLVMs have been proposed, but their efficient implementations have been lacking in the literature. To fill this gap, we show in this paper how to obtain computationally convenient estim…

0106 biological sciencesMultivariate statisticsMultivariate analysisComputer scienceBinomials01 natural sciencesPolynomials010104 statistics & probabilityAmoebastilastolliset mallitestimointiProtozoansLikelihood FunctionsMultidisciplinaryApproximation MethodsStatistical ModelsSimulation and ModelingApplied MathematicsStatisticsQLinear modelREukaryotaLaplace's methodData Interpretation StatisticalPhysical SciencesVertebratesMedicineAlgorithmAlgorithmsResearch ArticleOptimizationScienceLatent variableResearch and Analysis Methods010603 evolutionary biologygeneralized linear latent variable modelsSet (abstract data type)BirdsAnimalsComputer Simulation0101 mathematicsta112OrganismsBiology and Life SciencesStatistical modelMarginal likelihoodAlgebraAmniotesMultivariate AnalysisLinear ModelsMathematicsSoftwarePLoS ONE
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Soil functional indicators in a mountain forest-rangeland mosaic of northern Iran

2021

Abstract Soil plays an essential role in providing ecosystem services, especially in mountain ecosystems which are often considered as fragile and sensitive systems and commonly consist of a mosaic of forest and rangeland plant communities. The relationship between above-ground plant cover and the properties of soil organic and mineral layers in mountain areas are rarely studied. This research aimed to assess the effect of different land covers (i.e. forest, forest-rangeland ecotone, and rangeland) on soil functional indicators, i.e. fertility and biological activities, in the Hyrcanian region of northern Iran. We hypothesized that (i) the presence of tree cover enhances soil fertility and …

0106 biological sciencesTopsoilNutrient cycleSoil testEcologyBiological activitiesGeneral Decision SciencesPlant communityAbove-ground plant cover010501 environmental sciences010603 evolutionary biology01 natural sciencesLitter propertiesTree densityFertilityAgronomySoil functionsSoil waterLitterEnvironmental scienceSoil fertilityEcology Evolution Behavior and SystematicsQH540-549.50105 earth and related environmental sciencesEcological Indicators
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A molecular phylogeny for the leaf-roller moths (Lepidoptera: Tortricidae) and its implications for classification and life history evolution.

2012

BackgroundTortricidae, one of the largest families of microlepidopterans, comprise about 10,000 described species worldwide, including important pests, biological control agents and experimental models. Understanding of tortricid phylogeny, the basis for a predictive classification, is currently provisional. We present the first detailed molecular estimate of relationships across the tribes and subfamilies of Tortricidae, assess its concordance with previous morphological evidence, and re-examine postulated evolutionary trends in host plant use and biogeography.Methodology/principal findingsWe sequenced up to five nuclear genes (6,633 bp) in each of 52 tortricids spanning all three subfamil…

0106 biological sciencesTortricidaeGenetic SpeciationScienceZoologyChlidanotinaeGenes InsectMothsAnimal Phylogenetics010603 evolutionary biology01 natural sciencesEvolution MolecularMonophylyPhylogeneticsAnimalsEvolutionary SystematicsOlethreutinaeBiologyPhylogenyLikelihood FunctionsEvolutionary BiologyMultidisciplinarybiologyPhylogenetic treeEcologyQRComputational BiologyAgricultureBiodiversityAutecologybiology.organism_classificationPhylogenetics010602 entomologyBiogeographyEvolutionary biologyAnimal TaxonomyMolecular phylogeneticsMedicinePest ControlSequence AnalysisZoologyEntomologyTortricinaeMultilocus Sequence TypingResearch ArticlePloS one
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Pedotransfer functions for estimating soil water retention curve of Sicilian soils

2019

Pedotransfer functions (PTFs) make use of routinely surveyed soil data to estimate soil properties but their application to soils different from those used for their development can yield inaccurate estimates. This investigation aimed at evaluating the water retention prediction accuracy of eight existing PTFs using a database of 217 Sicilian soils exploring 11 USDA textural classes. PTFs performance was assessed by root mean square differences (RMSD) and average differences (AD) between estimated and measured data. Extended Nonlinear Regression (ENR) technique was adopted to recalibrate or develop four new PTFs and Wind’s evaporation method was applied to validate the effectiveness of the …

0106 biological sciencesYield (engineering)EvaporationSoil ScienceSoil scienceParametric pedotransfer functionwater retention model04 agricultural and veterinary sciences01 natural sciencesPedotransfer functionpedotransfer functions recalibrationextended nonlinear regression techniqueSoil water040103 agronomy & agriculture0401 agriculture forestry and fisheriesEnvironmental scienceSettore AGR/08 - Idraulica Agraria E Sistemazioni Idraulico-ForestaliSoil propertiesAgronomy and Crop Scienceevaporation method010606 plant biology & botany
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Heterozygosity-fitness correlations in adult and juvenile Zenaida Dove, Zenaida aurita.

2013

10 pages; International audience; Understanding how fitness is related to genetic variation is of crucial importance in both evolutionary ecology and conservation biology. We report a study of heterozygosity-fitness correlations in a wild, noninbred population of Zenaida Doves, Zenaida aurita, based on a sample comprising 489 individuals (382 adults and 107 juveniles) typed at 13 microsatellite loci, resulting in a data set comprising 5793 genotypes. In both adults and juveniles, and irrespective of sex, no evidence was found for an effect of either multilocus or single-locus heterozygosity on traits potentially related to fitness such as foraging tactic, competitive ability, and fluctuatin…

0106 biological sciencesZenaida dovesPopulation Dynamics01 natural sciencesFluctuating asymmetryLinkage DisequilibriumLoss of heterozygosityGenetics (clinical)0303 health scienceseducation.field_of_studyLikelihood FunctionsEcology[SDV.BID.EVO]Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE]Age Factorsoutbreeding depressionmultilocus heterozygosity[ SDV.BID.EVO ] Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE]body conditionBiotechnologyZenaida auritaHeterozygoteGenotypeOutbreeding depressionPopulationForagingZoologyBarbadosBiology010603 evolutionary biology03 medical and health sciencesGeneticsJuvenileAnimals14. Life underwatereducationColumbidaeMolecular Biology030304 developmental biologyPopulation Density[ SDE.BE ] Environmental Sciences/Biodiversity and EcologyModels GeneticGenetic Variationisland populationmicrosatellite markersbiology.organism_classificationGenetics PopulationBody ConstitutionGenetic Fitness[SDE.BE]Environmental Sciences/Biodiversity and EcologyMicrosatellite Repeats
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Functional responses of multitaxa communities to disturbance and stress gradients in a restored floodplain

2015

Trait-based approaches can reveal the mechanisms through which disturbances or stress impact communities, allowing comparisons of the role of different mechanisms in shaping communities among taxonomic groups. Such information can lead to higher comparability, transferability and predictability of the outcome of restoration projects. However, multitaxa trait-based approaches were rarely used in the context of ecosystem restoration. We investigated the responses to environmental gradients of seven taxa (vascular plants, staphylinid and carabid beetles, spiders, isopods, diplopods and earthworms) in a restored floodplain using a species traits approach. We assessed the impact of flood disturb…

0106 biological sciencesrestorationFloodplainBiodiversityearthwormsarthropods010603 evolutionary biology01 natural sciencesspecies traitsEcosystemFloodplain restorationRestoration ecologyComputingMilieux_MISCELLANEOUSbiodiversityEnvironmental gradient[ SDE.BE ] Environmental Sciences/Biodiversity and Ecologycommunity-weighted mean of traitsgeographygeography.geographical_feature_categoryEcologyplantsEcology010604 marine biology & hydrobiology15. Life on landfunctional diversityriparian ecosystemsDisturbance (ecology)Hydric soilecosystem functionsEnvironmental science[SDE.BE]Environmental Sciences/Biodiversity and EcologyJournal of Applied Ecology
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