Search results for "gadus"

Local cod (Gadus morhua) revealed by egg surveys and population genetic analysis after longstanding depletion on the Swedish Skagerrak coast

2018

Abstract Dramatic and persistent reductions in Atlantic cod (Gadus morhua) are common in many coastal areas. While offshore cod stocks still were abundant and productive, the Swedish west coast showed signs of diminishing adult cod abundance at the beginning of the 1980s, where the local cod component was considered to be extirpated. To survey the present cod spawning activity and stock composition, we initiated egg trawling over two consecutive years (203 hauls in total) in combination with population genetic analyses (425 individually genotyped eggs). Here, we provide evidence of cod spawning at the Swedish Skagerrak coast, suggesting recolonization or that local cod has recovered from a …

Who is fishing on what stock: population-of-origin of individual cod (Gadus morhua) in commercial and recreational fisheries

2018

AbstractAtlantic cod (Gadus morhua) in Skagerrak are structured into distinct ecotypes or stock components that have been severely depleted over the past decades. To improve our understanding of how local commercial and recreational fisheries influence cod stocks, we investigated whether these user groups target different stock components of cod. Cod were sampled from the recreational rod and line fishery and from commercial shrimp trawlers catching cod as by-catch. Based on a large set of single nucleotide polymorphisms (SNPs), we defined a subset of 27 semi-diagnostic SNPs designed to discriminate between two cod stock components: “inner fjord” cod and “North Sea” cod, designated by their…

Individual level consistency and correlations of fish spatial behaviour assessed from aquatic animal telemetry

2017

The potential for populations to undergo adaptive evolution depends on individual variation in traits under selection and how multiple traits are correlated. While fitness relates to the performance of animals in the wild, most of the research on evolutionary potential of behavioural traits has used captive or mesocosm settings, especially with aquatic organisms. We investigated the individual level consistency (personalities) and correlations (behavioural syndromes) of fitness-related behavioural traits displayed by a harvested marine fish in the natural environment, and the potential of such individual level behaviour to constrain adaptive evolution. For this, we acoustically tracked 303 …

Personalities influence spatial responses to environmental fluctuations in wild fish

2017

Abstract Although growing evidence supports the idea that animal personality can explain plasticity in response to changes in the social environment, it remains to be tested whether it can explain spatial responses of individuals in the face of natural environmental fluctuations. This is a major challenge in ecology and evolution as spatial dynamics link individual‐ and population‐level processes.In this study, we investigated the potential of individual personalities to predict differences in fish behaviour in the wild. Specifically, our goal was to answer if individual differences in plasticity of space use to sea surface temperature could be explained by differences in personality along …

"Islands of divergence" in the Atlantic cod genome represent polymorphic chromosomal rearrangements

2016

- In several species genetic differentiation across environmental gradients or between geographically separate populations has been reported to center at “genomic islands of divergence,” resulting in heterogeneous differentiation patterns across genomes. Here, genomic regions of elevated divergence were observed on three chromosomes of the highly mobile fish Atlantic cod (Gadus morhua) within geographically fine-scaled coastal areas. The “genomic islands” extended at least 5, 9.5, and 13 megabases on linkage groups 2, 7, and 12, respectively, and coincided with large blocks of linkage disequilibrium. For each of these three chromosomes, pairs of segregating, highly divergent alleles were id…

An improved genome assembly uncovers prolific tandem repeats in Atlantic cod

2016

AbstractBackground: The first Atlantic cod (Gadus morhua) genome assembly published in 2011 was one of the early genome assemblies exclusively based on high-throughput 454 pyrosequencing. Since then, rapid advances in sequencing technologies have led to a multitude of assemblies generated for complex genomes, although many of these are of a fragmented nature with a significant fraction of bases in gaps. The development of long-read sequencing and improved software now enable the generation of more contiguous genome assemblies.Results: By combining data from Illumina, 454 and the longer PacBio sequencing technologies, as well as integrating the results of multiple assembly programs, we have …

Evolutionary redesign of the Atlantic cod (Gadus morhua L.) Toll-like receptor repertoire by gene losses and expansions

2016

AbstractGenome sequencing of the teleost Atlantic cod demonstrated loss of the Major Histocompatibility Complex (MHC) class II, an extreme gene expansion of MHC class I and gene expansions and losses in the innate pattern recognition receptor (PRR) family of Toll-like receptors (TLR). In a comparative genomic setting, using an improved version of the genome, we characterize PRRs in Atlantic cod with emphasis on TLRs demonstrating the loss of TLR1/6, TLR2 and TLR5 and expansion of TLR7, TLR8, TLR9, TLR22 and TLR25. We find that Atlantic cod TLR expansions are strongly influenced by diversifying selection likely to increase the detectable ligand repertoire through neo- and subfunctionalizatio…

2017

Adaptation to local conditions is a fundamental process in evolution; however, mechanisms maintaining local adaptation despite high gene flow are still poorly understood. Marine ecosystems provide a wide array of diverse habitats that frequently promote ecological adaptation even in species characterized by strong levels of gene flow. As one example, populations of the marine fish Atlantic cod (Gadus morhua) are highly connected due to immense dispersal capabilities but nevertheless show local adaptation in several key traits. By combining population genomic analyses based on 12K single nucleotide polymorphisms with larval dispersal patterns inferred using a biophysical ocean model, we show…

Trans-oceanic genomic divergence of Atlantic cod ecotypes is associated with large inversions

2017

Chromosomal rearrangements such as inversions can play a crucial role in maintaining polymorphism underlying complex traits and contribute to the process of speciation. In Atlantic cod (Gadus morhua), inversions of several megabases have been identified that dominate genomic differentiation between migratory and nonmigratory ecotypes in the Northeast Atlantic. Here, we show that the same genomic regions display elevated divergence and contribute to ecotype divergence in the Northwest Atlantic as well. The occurrence of these inversions on both sides of the Atlantic Ocean reveals a common evolutionary origin, predating the >100 000-year-old trans-Atlantic separation of Atlantic cod. The long…

Gadskārtu svētki - 1,5 – 3 gadu vecu bērnu sociālo prasmju veicinātāji pirmsskolas izglītības iestādē

2021

Kvalifikācijas darbā ,, Gadskārtu svētki - 1,5 – 3 gadu vecu bērnu sociālo prasmju veicinātāji pirmsskolas izglītības iestādē” tiek pētīta sociālo prasmju veicināšana gadskārtu svētkos 1,5 – 3 gadus veciem bērniem. Darba autore veic teorētisku literatūras analīzi par sociālo prasmju veicināšanu, 1,5 -3 gadus vecu bērnu attīstības raksturojumu, pēta sociālo prasmju veicināšanu gadskārtu svētkos pirmsskolā, veic empīrisko pētījumu, izmantojot pedagoģisko novērojumu un izmēģinājumdarbību. Kvalifikācijas darba pirmajā daļā tiek analizēta literatūra otrajā daļā tiek veikts empīriskais pētījums, kurš balstās uz praktisku izmēģinājumdarbību . Lai atbildētu uz pētāmo jautājumu ,,Kā veicināt sociālā…