Search results for "gate"

The dark side of foetal bovine serum in extracellular vesicle studies

2022

Extracellular vesicles (EVs) have been shown to be involved in cell-cell communication and to take part in both physiological and pathological processes. Thanks to their exclusive cargo, which includes proteins, lipids, and nucleic acids from the originating cells, they are gaining interest as potential biomarkers of disease. In recent years, their appealing features have been fascinating researchers from all over the world, thus increasing the number of in vitro studies focused on EV release, content, and biological activities. Cultured cell lines are the most-used source of EVs; however, the EVs released in cell cultures are influenced by the cell culture conditions, such as the use of fo…

Glycoconjugate expression in the extracellular matrix of the mouse lung (87.7)

2014

Firing characteristics of vestibular nuclei neurons in the alert monkey after bilateral vestibular neurectomy

1992

After destruction of the peripheral vestibular system which is not activated by moving large-field visual stimulation, not only labyrinthine-ocular reflexes but also optokinetic-ocular responses related to the "velocity storage" mechanism are abolished. In the normal monkey optokinetic-ocular responses are reflected in sustained activity changes of central vestibular neurons within the vestibular nuclei. To account for the loss of optokinetic responses after labyrinthectomy, inactivation of central vestibular neurons consequent on the loss of primary vestibular activity is assumed to be of major importance. To test this hypothesis we recorded the neural activity within the vestibular nuclea…

Phasor FLIM analysis of Thioflavin T fluorescence in protein amyloid aggregates: Mapping molecular interactions.

Thioflavin T (ThT) is a worldwide used dye to monitor protein aggregation as it stains with a certain specificity amyloid structures. The interactions between ThT and its hosts are largely studied suggesting that fluorescence properties of this dye critically depend both on the environment rigidity, electrostatic and hydrophobic properties as well as on molecular details binding site structure. Here FLIM and phasor approach analysis are used to exploit ThT amyloid interactions and, in turn, to address polymorphism and structural heterogeneity of amyloid species mapping aggregate-to-aggregate structural differences and revealing details of molecular architecture within the same aggregate.

Deep Importance Sampling based on Regression for Model Inversion and Emulation

2021

Understanding systems by forward and inverse modeling is a recurrent topic of research in many domains of science and engineering. In this context, Monte Carlo methods have been widely used as powerful tools for numerical inference and optimization. They require the choice of a suitable proposal density that is crucial for their performance. For this reason, several adaptive importance sampling (AIS) schemes have been proposed in the literature. We here present an AIS framework called Regression-based Adaptive Deep Importance Sampling (RADIS). In RADIS, the key idea is the adaptive construction via regression of a non-parametric proposal density (i.e., an emulator), which mimics the posteri…

Surrogate outcomes and transportability

2019

Identification of causal effects is one of the most fundamental tasks of causal inference. We consider an identifiability problem where some experimental and observational data are available but neither data alone is sufficient for the identification of the causal effect of interest. Instead of the outcome of interest, surrogate outcomes are measured in the experiments. This problem is a generalization of identifiability using surrogate experiments and we label it as surrogate outcome identifiability. We show that the concept of transportability provides a sufficient criteria for determining surrogate outcome identifiability for a large class of queries.

Learning how to live together: genomic insights into prokaryote–animal symbioses

2008

Our understanding of prokaryote-eukaryote symbioses as a source of evolutionary innovation has been rapidly increased by the advent of genomics, which has made possible the biological study of uncultivable endosymbionts. Genomics is allowing the dissection of the evolutionary process that starts with host invasion then progresses from facultative to obligate symbiosis and ends with replacement by, or coexistence with, new symbionts. Moreover, genomics has provided important clues on the mechanisms driving the genome-reduction process, the functions that are retained by the endosymbionts, the role of the host, and the factors that might determine whether the association will become parasitic…

Evolution of Prokaryote-Animal Symbiosis from a Genomics Perspective

2010

Symbioses involving prokaryotes living in close relationship with eukaryotic cells have been widely studied from a genomic perspective, especially in the case of insects. In the process toward host accommodation, symbionts experience major genetic and phenotypic changes that can be detected in comparison with free-living relatives. But, as expected, several scenarios allowed the evolution of symbiotic associations, from the first stages of free-living bacteria, through secondary and facultative symbiosis, towards the final point of obligate primary endosymbiosis. Particular relevance has the association formed by the coexistence of several symbionts into a given host. A summary of findings …

A second-order sparse factorization method for Poisson's equation with mixed boundary conditions

1992

Abstract We propose an algorithm for solving Poisson's equation on general two-dimensional regions with an arbitrary distribution of Dirichlet and Neumann boundary conditions. The algebraic system, generated by the five-point star discretization of the Laplacian, is solved iteratively by repeated direct sparse inversion of an approximating system whose coefficient matrix — the preconditioner — is second-order both in the interior and on the boundary. The present algorithm for mixed boundary value problems generalizes a solver for pure Dirichlet problems (proposed earlier by one of the authors in this journal (1989)) which was found to converge very fast for problems with smooth solutions. T…

Implementing a Margolus Neighborhood Cellular Automata on a FPGA

2003

Margolus neighborhood is the easiest form of designing Cellular Automata Rules with features such as invertibility or particle conserving. In this paper we introduce a notation to describe completely a rule based on this neighborhood and implement it in two ways: The first corresponds to a classical RAM-based implementation, while the second, based on concurrent cells, is useful for smaller systems in which time is a critical parameter. This implementation has the feature that the evolution of all the cells in the design is performed in the same clock cycle.