Search results for "geneettinen"
showing 10 items of 52 documents
Direct pathway cloning and expression of the radiosumin biosynthetic gene cluster
2023
Radiosumins are a structurally diverse family of low molecular weight natural products that are produced by cyanobacteria and exhibit potent serine protease inhibition. Members of this family are dipeptides characterized by the presence of two similar non-proteinogenic amino acids. Here we used a comparative bioinformatic analysis to identify radiosumin biosynthetic gene clusters from the genomes of 13 filamentous cyanobacteria. We used direct pathway cloning to capture and express the entire 16.8 kb radiosumin biosynthetic gene cluster from Dolichospermum planctonicum UHCC 0167 in Escherichia coli. Bioinformatic analysis demonstrates that radiosumins represent a new group of chorismate-der…
Mitochondrial DNA variation of Drosophila obscura (Diptera: Drosophilidae) across Europe
2022
Drosophila obscura is a common fruit fly that inhabits the temperate forests of Europe. While it is abundant in the north compared to other Drosophila, its density decreases southwards, where it is gradually replaced by other Drosophila species. This study describes variation in the mitochondrial Cyt b gene of D. obscura from several European populations. We observed a large number of haplotypes, together with the structuring of genetic variation. Genetic variation is higher in the west where O1 and related divergent haplotypes dominate. In the east, the O2 haplotype is most frequent, together with haplotypes that recently arose from it. In the central part of the species range, both O1 and…
A legacy of contrasting spatial genetic structure on either side of the Atlantic-Mediterranean transition zone in a marine protist
2012
The mechanisms that underpin the varied spatial genetic structures exhibited by free-living marine microorganisms remain controversial, with most studies emphasizing a high dispersal capability that should redistribute genetic diversity in contrast to most macroorganisms whose populations often retain a genetic signature of demographic response to historic climate fluctuations. We quantified the European phylogeographic structure of the marine flagellate Oxyrrhis marina and found a marked difference in spatial genetic structure, population demography, and genetic diversity between the northwest Atlantic and Mediterranean Sea that reflects the persistent separation of these regions as well …
Manipulating genetic architecture to reveal fitness relationships
2014
Comparing RADseq and microsatellites for estimating genetic diversity and relatedness : Implications for brown trout conservation
2019
The conservation and management of endangered species requires information on their genetic diversity, relatedness and population structure. The main genetic markers applied for these questions are microsatellites and single nucleotide polymorphisms (SNPs), the latter of which remain the more resource demanding approach in most cases. Here, we compare the performance of two approaches, SNPs obtained by restriction-site-associated DNA sequencing (RADseq) and 16 DNA microsatellite loci, for estimating genetic diversity, relatedness and genetic differentiation of three, small, geographically close wild brown trout (Salmo trutta) populations and a regionally used hatchery strain. The genetic di…
The effect of environmental fluctuations on the invasion success of bacterial invader Serratia marcescens
2017
Ilmastonmuutoksen on odotettu lisäävän ympäristöolosuhteissa tapahtuvien vaihteluiden määrää. Teorian mukaan nämä vaihtelut voisivat lisätä vieraslajien levittäytymistä uusille alueille, mikäli ne vaikuttavat ekologisiin ja evolutiivisiin prosesseihin, jotka tekevät lajeista menestyksekkäitä vieraslajeja sekä paikallisista eliöyhteisöistä ja ympäristöistä alttiimpia levittäytymiselle. Häiriöherkkien alueiden on oletettu olevan otollisia levittäytymiselle, minkä lisäksi vieraslajit ovat voineet valmiiksi sopeutua sietämään vaihtelevia olosuhteita alkuperäisalueellaan. Nopeasti vaihtelevissa ympäristöolosuhteissa luonnonvalinta voi suosia ominaisuuksia, kuten generalismia, joka auttaa eliöitä…