Search results for "genomic"

Molecular Basis for the Regulation of Cell Fate by the Lethal (2) Giant Larvae Tumour Suppressor Gene of Drosophila Melanogaster

2007

Tumour suppressor genes act as recessive determinants of cancer. Their function is required for normal cell growth and differentiation during development. When both alleles of these developmental genes are inactivated, cell growth becomes unrestricted. In Drosophila, a series of genes have been identified which when mutated produce tissue-specific tumours. Of these the lethal(2)giant larvae (l(2)gl) gene is the best studied. Homozygous l(2)gl mutations cause the development of malignant tumours in the brain and the imaginal discs. Genomic DNA from the l(2)gl locus has been cloned, introduced back into l(2)gl mutant animals by P-element-mediated transformation and shown to restore normal dev…

The influence of backslopping on lactic acid bacteria diversity in tarhana fermentation

2020

Tarhana is produced at batch systems in which the microbiota has changed accordingly to the microbial load from ingredients. In order to stabilize the microbiota, the effects of backslopping carried out under different temperature regimes (25 and 30 °C), pH (3.70 and 4.00) and inoculation rates (5, 10 and 15%) on lactic acid bacteria (LAB) diversity were determined in tarhana dough. LAB and Total Aerobic Mesophilic Bacteria (TAMB) numbers increased in all tarhana dough samples subjected to backslopping. Temperature and pH significantly affected the microbiological diversity of tarhana whereas the different inoculation rates did not. Tarhana dough showed complex tarhana microbiota following …

Toward an integrated approach for studying plant-microbe interactions in the rhizosphere: from genomic to proteomic

2006

International audience

OPERATIONAL STRATEGIES FOR IMPROVING THE COMPETITIVENESS OF THE VALLE DEL BELÌCE SHEEP BREED

2021

Evolutionary systems biology of the Mycobacterium tuberculosis complex

2019

Tesis doctoral, 214 páginas

Comparative genomics to unravel adaptive mechanisms in Saccharomyces

2021

Saccharomyces genus is a fascinating model for evolutionary biology due to its high genetic and phenotypic diversity. The improvement in the sampling efforts during the last decade has resulted in the isolation of Saccharomyces species from a wide range of sources worldwide. S. cerevisiae is probably the most well known eukaryotic system and the dominant organism in most industrial fermentations. Due to the new challenges of the winemaking industry (e.g., global warming and changing customer demands), alternative Saccharomyces species have attracted researchers’ attention during the last decade as a poorly exploited resource of biodiversity. S. kudriavzevii and S. uvarum are two promising c…

EnvDB, a database for describing the environmental distribution of prokaryotic taxa.

2009

Summary EnvDB is a database that classifies the environmental samples and their associated 16S rDNA sequences currently stored in GenBank. The samples were cat- egorized in a three-level, hierarchical classification of media: the five upper levels (terrestrial, aquatic, thermal, host-associated and other) are further decomposed in 20 intermediate (such as marine, marine sediments, freshwater, soil, gut, etc.) and 47 lower levels (for instance, soil is further decomposed in forest, agricultural, wetlands, grasslands, tropical, arid, etc.). Each sample was also characterized with nine environmental features: polluted, diseased (for clinical samples), acidic, alkaline, hot environment, cold en…

Combining population genomics with demographic analyses highlights habitat patchiness and larval dispersal as determinants of connectivity in coastal…

2022

Gene flow shapes spatial genetic structure and the potential for local adaptation. Among marine animals with nonmigratory adults, the presence or absence of a pelagic larval stage is thought to be a key determinant in shaping gene flow and the genetic structure of populations. In addition, the spatial distribution of suitable habitats is expected to influence the distribution of biological populations and their connectivity patterns. We used whole genome sequencing to study demographic history and reduced representation (double-digest restriction associated DNA) sequencing data to analyse spatial genetic structure in broadnosed pipefish (Syngnathus typhle). Its main habitat is eelgrass beds…

easyPAC: A Tool for Fast Prediction, Testing and Reference Mapping of Degenerate PCR Primers from Alignments or Consensus Sequences

2012

Video abstract A video abstract by the authors of this paper is available. video-abstract8870.mov

Divergent parasite infections in sympatric cichlid species in Lake Victoria

2018

Parasitism has been proposed as a factor in host speciation, as an agent affecting coexistence of host species in species‐rich communities and as a driver of post‐speciation diversification. Young adaptive radiations of closely related host species of varying ecological and genomic differentiation provide interesting opportunities to explore interactions between patterns of parasitism, divergence and coexistence of sympatric host species. Here, we explored patterns in ectoparasitism in a community of 16 fully sympatric cichlid species at Makobe Island in Lake Victoria, a model system of vertebrate adaptive radiation. We asked whether host niche, host abundance or host genetic differentiatio…