Search results for "genomiikka"
showing 4 items of 24 documents
Chromatin structure influences rate and spectrum of spontaneous mutations in Neurospora crassa
2023
While mutation rates have been extensively studied, variation in mutation rates throughout the genome is poorly understood. To understand patterns of genetic variation, it is important to understand how mutation rates vary. Chromatin modifications may be an important factor in determining variation in mutation rates in eukaryotic genomes. To study variation in mutation rates, we performed a mutation accumulation experiment in the filamentous fungus Neurospora crassa, and sequenced the genomes of the 40 MA lines that had been propagated asexually for approximately 1015 [1003, 1026] mitoses. We detected 1322 mutations in total, and observed that the mutation rate was higher in regions of low …
Morphological and molecular analysis of the freshwater bivalve Anodonta anatina in Iran and Finland
2022
Duck mussel, Anodonta anatina is a habitat generalist inhabiting both lentic and lotic aquatic ecosystems. Due to high morphological similarity and phenotypic plasticity, A. anatina has sometimes been misidentified as A. cygnea. Here, morphological and molecular studies were conducted on Anodonta mussels inhabiting North Iran and Finland. The individuals were collected from Anzali Wetland, Tajan River (North Iran) and Jyväsjärvi Lake (Finland). The COI sequence analysis showed the existence of A. anatina in the sampling areas. The Iranian and Finland specimens showed three and two haplotypes, respectively. The Iranian haplotypes were placed in a single clade, while the Finland haplotypes we…
In-depth characterization of denitrifier communities across different soil ecosystems in the tundra
2022
Abstract Background In contrast to earlier assumptions, there is now mounting evidence for the role of tundra soils as important sources of the greenhouse gas nitrous oxide (N2O). However, the microorganisms involved in the cycling of N2O in this system remain largely uncharacterized. Since tundra soils are variable sources and sinks of N2O, we aimed at investigating differences in community structure across different soil ecosystems in the tundra. Results We analysed 1.4 Tb of metagenomic data from soils in northern Finland covering a range of ecosystems from dry upland soils to water-logged fens and obtained 796 manually binned and curated metagenome-assembled genomes (MAGs). We then sear…
The complete mitochondrial genome of the wood tiger moth (Arctia plantaginis) and phylogenetic analyses within Arctiinae
2021
We report the assembly and annotation of the complete mitochondrial genome of the warningly-coloured wood tiger moth (Arctia plantaginis) and investigate its phylogenetic position within Arctiinae. The A.plantaginis mitogenome is 15,479 bp long with 13 protein-coding genes, 22 transfer RNAs, 2 ribosomal RNA genes, and an A + T-rich region (D-loop). The phylogenetic analyses based on 13 protein-coding genes showed A.plantaginis clustering within a clade of species with white wings and yellow or red bodies. This result can be useful in understanding the evolution of coloration in Arctiid moths. Peer reviewed