Search results for "image analysis"
showing 10 items of 153 documents
Adaptive Techniques for Microarray Image Analysis with Related Quality Assessment
2007
We propose novel techniques for microarray image analysis. In particular, we describe an overall pipeline able to solve the most common problems of microarray image analysis. We pro- pose the microarray image rotation algorithm (MIRA) and the statis- tical gridding pipeline (SGRIP) as two advanced modules devoted to restoring the original microarray grid orientation and to detecting, the correct geometrical information about each spot of input mi- croarray, respectively. Both solutions work by making use of statis- tical observations, obtaining adaptive and reliable information about each spot property. They improve the performance of the microarray image segmentation pipeline (MISP) we rec…
Automatische Berechnung des Milzvolumens aus Spiral-CT-Daten mit Hilfe neuronaler Netze und „Fuzzy Logik”∗
2000
PURPOSE To assess spleen segmentation and volumentry in spiral CT scans with and without pathological changes of splenic tissue. METHODS The image analysis software HYBRIKON is based on region growing, self-organized neural nets, and fuzzy-anatomic rules. The neural nets were trained with spiral CT data from 10 patients, not used in the following evaluation on spiral CT scans from 19 patients. An experienced radiologist verified the results. The true positive and false positive areas were compared in terms to the areas marked by the radiologist. The results were compared with a standard thresholding method. RESULTS The neural nets achieved a higher accuracy than the thresholding method. Cor…
Canopy Architecture Appraisal by Fractal Dimension of 'Flordastar' Peach Trees Grafted onto Different Rootstocks
2007
The objective of this research was to evaluate the modification of canopy architecture of ''Flordastar'' peach (Prunus persica L. Batsch) grafted onto rootstocks with different vigour, by the use of fractal dimension (D). The hypothesis was that different vigour rootstocks are able to modify the complexity of the branching pattern and that this effect can be assessed by a geometric parameter such as the fractal dimension (D) of the 2D projection of tree branching structure. The observations were carried out in a four-year-old experimental orchard of cv. ''Flordastar'' peach trees grafted onto Ishtara, Barrier, GF677 and MrS 2/5 rootstocks. On digital pictures of leafless, dormant peach tree…
Differences of raw cork quality in productive cork oak woods in Sicily in relation to stand density
2010
Differences of raw cork quality, in terms of thickness and porosity, were observed in productive cork oak (Quercus suber L.) stands in the Nebrodi and Iblei mountains of Sicily in relation to stand density. Five study areas were chosen across a range of different stand density satisfying specific sampling requirements among two managed cork oak stands. Analysis of variance using Fisher-Snedecor's F test (p<0,05) were used to identify statistically significant differences of cork quality and sylvicultural, dendrometric and cork stripping parameters between study areas within each stand and also between stands. Relationships between cork quality and sylvicultural and dendrometric parameters w…
X-ray microtomography and laser ablation in the analysis of ink distribution in coated paper
2015
A novel method was developed for studying the ink-paper interface and the structural variations of a deposited layer of ink. Combining high-resolution x-ray tomography with laser ablation, the depth profile of ink (toner), i.e., its varying thickness, could be determined in a paper substrate. X-ray tomography was used to produce the 3D structure of paper with about 1 μm spatial resolution. Laser ablation combined with optical imaging was used to produce the 3D structure of the printed layer of ink on top of that paper with about 70 nm depth resolution. Ablation depth was calibrated with an optical profilometer. It can be concluded that a toner layer on a light-weight-coated paper substrate …
How and why does willow biochar increase a clay soil water retention capacity?
2018
Addition of biochar into a soil changes its water retention properties by modifying soil textural and structural properties. In addition, internal micrometer-scale porosity that is able to directly store readily plant available water affects soil water retention properties. This study shows how precise knowledge of the internal micrometer-scale pore size distribution of biochar can deepen the understanding of the biochar-water interactions in soils. The micrometer-scale porosity of willow biochar was quantitatively and qualitatively characterized using X-ray tomography, 3D image analysis and Helium ion microscopy. The effect of biochar application on clay soil water retention was studied by…
Reclaimed asphalt test specimen preparation assisted by image analysis
2015
This paper presents a laboratory investigation aimed at establishing a protocol for the production of homogeneous asphalt mixtures test specimens, incorporating reclaimed asphalt by using a gyratory compactor with coring and trimming works. Stone mastic asphalt specimens were compacted at the previously identified target densities with the final aim of obtaining specimens with a fixed and homogeneous air void distribution. A microstructural study was conducted to characterize the homogeneity in the air void distribution using X-ray computed tomography (CT) combined with image analysis techniques. The study concluded that the gyratory compactor is suitable for producing homogeneous test spec…
Dispositif virtuel d'aide à la chirurgie de l'épaule
2008
The goal of this research is to design a virtual reality prototype to assit an orthopedic surgeon during the replacement of the glenohumeral joint by prosthesis. This system aims to optimize the movements of prosthesized shoulder joint from a choice of various scenarios of pose. These works encompasses several topics such as : orthopedic surgery, image analysis, computer graphics and virtual reality. The chosen process includes a phase of modelling of the bony part of the articulation by simple geometric forms, this model is parameterized from radios or CT scans ; a phase of simulation of the movements of healthy glenohumeral joint ; nally the phase of simulation of cutting and drilling wit…
Reaction-Diffusion Network For Geometric Multiscale High Speed Image Processing
2010
International audience; In the framework of heavy mid-level processing for high speed imaging, a nonlinear bi-dimensional network is proposed, allowing the implementation of active curve algorithms. Usually this efficient type of algorithm is prohibitive for real-time image processing due to its calculus charge and the inadequate structure for the use of serial or parallel architectures. Another kind of implementation philosophy is proposed here, by considering the active curve generated by a propagation phenomenon inspired from biological modeling. A programmable nonlinear reaction-diffusion system is proposed under front control and technological constraints. Geometric multiscale processin…
Ontology-driven Image Analysis for Histopathological Images
2010
International audience; Ontology-based software and image processing engine must cooperate in new fields of computer vision like microscopy acquisition wherein the amount of data, concepts and processing to be handled must be properly controlled. Within our own platform, we need to extract biological objects of interest in huge size and high-content microscopy images. In addition to specific low-level image analysis procedures, we used knowledge formalization tools and high-level reasoning ability of ontology-based software. This methodology made it possible to improve the expressiveness of the clinical models, the usability of the platform for the pathologist and the sensitivity or sensibi…