Search results for "interaction network"
showing 9 items of 39 documents
Modular organization in the reductive evolution of protein-protein interaction networks
2006
Analysis of the reduction in genome size of Buchnera aphidicola from its common ancestor E. coli shows that the organization of networks into modules is the property that seems to be directly related with the evolutionary process of genome reduction.
On Topological Structure of Web Services Networks for Composition. In Int. Journal of Web Engineering and Technology
2013
In order to deal efficiently with the exponential growth of the Web services landscape in composition life cycle activities, it is necessary to have a clear view of its main features. As for many situations where there is a lot of interacting entities, the complex networks paradigm is an appropriate approach to analyze the interactions between the multitudes of Web services. In this paper, we present and investigate the main interactions between semantic Web services models from the complex network perspective. Results show that both parameter and operation networks exhibit the main characteristics of typical real-world complex networks such as the "small-world" property and an inhomogeneou…
Mapping, understanding and predicting soil microbial diversity across France
2018
International audience; Microorganisms are extremely abundant and diverse in soils. Their huge diversity is central in soil functioning regarding the diversity of functions it supports (mineralization, detoxification, stability of soil…) and is more and more studied, especially in a context of increasing pressure on soil resources. Conversely to macroorganisms whose distribution on a wide scale has been studied for over a century, spatial scaling and determinism distribution of soil microorganisms on nationwide scale still needs to be documented, notably to decipher the environmental filters shaping these communities. communities were investigated at the scale of France to characterize thei…
Biotic homogenisation in bird communities leads to large‐scale changes in species associations
2021
The impact of global change on biodiversity is commonly assessed in terms of changes in species distributions, community richness and community composition. Whether and how much associations between species are also changing is much less documented. In this study, we quantify changes in large-scale patterns of species associations in bird communities in relation to changes in species composition. We use network approaches to build three community-aggregated indices reflecting complementary aspects of species association networks. We characterise the spatio–temporal dynamics of these indices using a large-scale and high-resolution dataset of bird co-abundances of 109 species monitored for 17…
Experimental evaluation of topological-based fitness functions to detect complexes in PPI networks
2012
The detection of groups of proteins sharing common biological features is an important research issue, intensively investigated in the last few years, because of the insights it can give in understanding cell behavior. In this paper we present an extensive experimental evaluation campaign aiming at exploring the capability of Genetic Algorithms (GAs) to find clusters in protein-protein interaction networks, when different topological-based fitness functions are employed. A complete experimentation on the yeast protein-protein interaction network, along with a comparative evaluation of the effectiveness in detecting true complexes on the yeast and human networks, reveals GAs as a feasible an…
Restricted Neighborhood search clustering revisited: an evolutionary computation perspective
2013
Data from: Symbiotic polydnavirus and venom reveal parasitoid to its hyperparasitoids
2018
Symbiotic relationships may provide organisms with key innovations that aid in the establishment of new niches. For example, during oviposition, some species of parasitoid wasps, whose larvae develop inside the bodies of other insects, inject polydnaviruses into their hosts. These symbiotic viruses disrupt host immune responses, allowing the parasitoid’s progeny to survive. Here, we show that symbiotic polydnaviruses also have a downside to the parasitoid’s progeny by initiating a multi-trophic chain of interactions that reveals the parasitoid larvae to their enemies. These enemies are hyperparasitoids that use the parasitoid progeny as host for their own offspring. We found that the virus …
Biotic homogenisation in bird communities leads to large-scale changes in species associations
2020
AbstractAimThe impact of global change on biodiversity is commonly assessed in terms of changes in species distributions, community richness and community composition. Whether and how much associations between species, i.e. the degree of correlation in their spatial co-occurrence, are also changing is much less documented and mostly limited to local studies of ecological networks. In this study, we quantify changes in large-scale patterns of species associations in bird communities in relation to changes in species composition.LocationFrance.Time period2001-2017.Major taxa studiedCommon breeding birds.MethodsWe use network approaches to build three community-aggregated indices reflecting co…