Search results for "localization"

showing 10 items of 443 documents

Calcium negatively regulates meprin β activity and attenuates substrate cleavage

2015

The meprin β metalloproteinase is an important enzyme in extracellular matrix turnover, inflammation, and neurodegeneration in humans and mice. Previous studies showed a diminished cleavage of certain meprin β substrates in the presence of calcium, although the mechanism was not clear. With the help of a specific fluorogenic peptide assay and the human amyloid precursor protein as substrate, we demonstrated that the influence of calcium is most likely a direct effect on human meprin β itself. Analyzing the crystal structures of pro- and mature meprin β helped to identify a cluster of negatively charged amino acids forming a potential calcium binding site. Mutation of 2 of these residues (D2…

Protein Foldingchemistry.chemical_elementCalciumEndoplasmic ReticulumBiochemistryCell LineSubstrate SpecificityAmyloid beta-Protein PrecursorChlorocebus aethiopsGeneticsAmyloid precursor proteinAnimalsHumansAmino Acid SequenceBinding siteProtein precursorMolecular BiologyCellular localizationSecretory pathwayMetalloproteinaseAmyloid beta-PeptidesBinding SitesbiologyEndoplasmic reticulumMetalloendopeptidasesCell biologyHEK293 CellschemistryCOS CellsMutationMetalloproteasesbiology.proteinCalciumAmyloid Precursor Protein SecretasesSequence AlignmentBiotechnologyThe FASEB Journal
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Secretory Pathway Research: The More Experimental Systems the Better

2012

Transient gene expression, in plant protoplasts or specific plant tissues, is a key technique in plant molecular cell biology, aimed at exploring gene products and their modifications to examine functional subdomains, their interactions with other biomolecules, and their subcellular localization. Here, we highlight some of the major advantages and potential pitfalls of the most commonly used transient gene expression models and illustrate how ectopic expression and the use of dominant mutants can provide insights into protein function.

Protein functionMolecular cell biologySecretory PathwayProtoplastsResearchfungiMutantfood and beveragesBiological TransportCell BiologyPlant ScienceBiologySubcellular localizationCell biologyPlant LeavesPerspectiveGene expressionEctopic expressionGeneSecretory pathwayFluorescent DyesThe Plant Cell
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Identification of Trans-Golgi Network Proteins in Arabidopsis thaliana Root Tissue

2014

Knowledge of protein subcellular localization assists in the elucidation of protein function and understanding of different biological mechanisms that occur at discrete subcellular niches. Organelle-centric proteomics enables localization of thousands of proteins simultaneously. Although such techniques have successfully allowed organelle protein catalogues to be achieved, they rely on the purification or significant enrichment of the organelle of interest, which is not achievable for many organelles. Incomplete separation of organelles leads to false discoveries, with erroneous assignments. Proteomics methods that measure the distribution patterns of specific organelle markers along densit…

ProteomicsArabidopsis thalianaArabidopsisorganelle proteomicsProteomicsPlant RootsBiochemistryArticlesymbols.namesakeArtificial IntelligenceTandem Mass SpectrometryArabidopsisOrganelleArabidopsis thalianaChromatography Reverse-PhaseimmunoisolationbiologyArabidopsis Proteinstrans-Golgi networkGeneral ChemistryGolgi apparatusbiology.organism_classificationSubcellular localizationLOPITCell biologyIsobaric labelingphenoDiscomachine learningsymbolsIdentification (biology)Journal of Proteome Research
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Molecular determinants of large cargo transport into the nucleus

2020

Nucleocytoplasmic transport is tightly regulated by the nuclear pore complex (NPC). Among the thousands of molecules that cross the NPC, even very large (>15 nm) cargoes such as pathogens, mRNAs and pre-ribosomes can pass the NPC intact. For these cargoes, there is little quantitative understanding of the requirements for their nuclear import, especially the role of multivalent binding to transport receptors via nuclear localisation sequences (NLSs) and the effect of size on import efficiency. Here, we assayed nuclear import kinetics of 30 large cargo models based on four capsid-like particles in the size range of 17–36 nm, with tuneable numbers of up to 240 NLSs. We show that the requireme…

QH301-705.5ScienceStructural Biology and Molecular Biophysicspermeabilized cellsimport kineticsNuclear Localization SignalsBiophysicslarge cargoActive Transport Cell NucleusNLSnuclear transportGeneral Biochemistry Genetics and Molecular Biology03 medical and health sciences0302 clinical medicinemedicinecapsidNLSHumansNuclear poreBiology (General)030304 developmental biologyCell Nucleus0303 health sciencesGeneral Immunology and MicrobiologyChemistryGeneral NeuroscienceMolecular biophysicsQRE. coliGeneral MedicineCell Biologymedicine.anatomical_structureStructural biologyNucleocytoplasmic TransportBiophysicsNuclear PoreMedicineNuclear transportCarrier ProteinsFlux (metabolism)Nucleus030217 neurology & neurosurgeryResearch ArticleHumaneLife
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Simultaneous field-free molecular orientation and planar delocalization by THz laser pulses

2022

This study shows the unexpected and counter-intuitive possibility of simultaneously orienting a molecule while delocalizing its molecular axis in a plane in field-free conditions. The corresponding quantum states are characterized and different control strategies using shaped THz laser pulses are proposed to reach such states at zero and nonzero temperatures. The robustness against temperature effects of a simple control procedure combining a laser and a THz pulse is shown. Such control strategies can be applied not only to linear molecules but also to symmetric top molecules.

Quantum Physicsdelocalizationmolecule linearFOS: Physical sciencestemperature effectQuantum Physics (quant-ph)[PHYS.QPHY] Physics [physics]/Quantum Physics [quant-ph]laser
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Unveiling two-dimensional discrete quantum walks dynamics via dispersion relations

2011

The discrete, or coined, quantum walk (QW) [1] is a process originally introduced as the quantum counterpart of the classical random walk (RW). In both cases there is a walker and a coin: at every time step the coin is tossed and the walker moves depending on the toss output. Unlike the RW, in the QW the walker and coin are quantum in nature what allows the coherent superpositions right/left and head/tail happen. This feature endows the QW with outstanding properties, such as making the standard deviation of the position of an initially localized walker grow linearly with time t, unlike the RW in which this growth goes as t1/2. This has strong consequences in algorithmics and is one of the …

Quantum opticsPhysicsAnderson localizationlawAlgorithmicsQuantum mechanicsQuantum walkRandom walkQuantumBose–Einstein condensateQuantum chaoslaw.invention
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Parametric self-trapping in the presence of randomized quasi phase matching

2010

We report on experimental evidence of parametric spatial solitons in a quadratic crystal with randomized periodic ferroelectric poling. Two-color self-focusing via quadratic cascading overcomes the diffractive nature of both fundamental and frequency-doubled beams.

Quasi-phase-matchingAnderson localizationNonlinear opticsSpatial solitons01 natural sciences010309 opticsQuadratic equationOpticsdisordered systems0103 physical sciencescomplex systems; disordered systems; nonlinear optics; nonlinear waves; second harmonic generation; solitonssolitonscomplex systems010306 general physicsParametric statisticsPhysicsComputer simulationsecond harmonic generationbusiness.industryPolingParametric processesnonlinear wavesFerroelectricityAtomic and Molecular Physics and OpticsbusinessRefractive indexSpatial solitons Nonlinear optics Parametric processesOptics Letters
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RSS-eye: Human-assisted Indoor Localization without Radio Maps

2015

The pervasive diffusion of smartphones is boosting indoor positioning solutions and location-based services. We propose a novel methodology to perform indoor positioning of mobile users by the estimation of angles of arrival from access points whose locations are known. Angles of arrival are estimated by correlating WiFi RSSI measurements with data coming from a digital compass, which is provided by most current handsets. Our system has minimal requirements in terms of infrastructure and mobile hardware. The system neither needs calibration, nor radio maps but requires the user to perform a gesture when an estimation is needed. The resulting on-demand localization has advantages in terms of…

RSSI indoor localization WiFi AoA estimationbusiness.industryComputer scienceSettore ING-INF/03 - TelecomunicazioniAngle of arrivalRSSCompassReal-time computingcomputer.file_formatbusinesscomputerMultipath propagationComputer network
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α1-Adrenoceptors in the rat cerebral cortex: New insights into the characterization of α1L- and α1D-adrenoceptors

2010

36 p., figuras y tablas, bibliografía

Rat cerebral cortexAdrenergic receptorG proteinInositol PhosphatesBiologyAlpha1-adrenoceptor subtypesBinding CompetitiveCytosolReceptors Adrenergic alpha-1medicineAnimalsRNA MessengerRats WistarBinding siteInositol phosphate[3H]prazosin binding studiesCellular localizationCerebral CortexPharmacologychemistry.chemical_classificationReverse Transcriptase Polymerase Chain ReactionCell MembraneRatsCell biologyCytosolmedicine.anatomical_structureGene Expression RegulationBiochemistrychemistryAlpha1L-adrenoceptorsCerebral cortexG-proteinsFemaleGuanosine TriphosphateIntracellularAlpha1D-intracellular localizationEuropean Journal of Pharmacology
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Exploiting physical layer flexibility for high-capacity and ultra-dense wireless networks

2020

ReCoPhysical layer flexibilitySettore ING-INF/03 - TelecomunicazioniLocalizationUltra-dense networkLoRa
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