Search results for "loop"
showing 10 items of 608 documents
HIF-1α induces MXI1 by alternate promoter usage in human neuroblastoma cells
2009
Adaptation to low oxygen conditions is essential for maintaining homeostasis and viability in oxygen-consuming multi-cellular tissues, including solid tumors. Central in these processes are the hypoxia-inducible transcription factors, HIF-1 and HIF-2, controlling genes involved in e.g. glucose metabolism and neovascularization. Tumor hypoxia and HIF expression have also been associated with a dedifferentiated phenotype and increased aggressiveness. In this report we show that the MAX interactor-1 (MXI1) gene is directly regulated by HIF proteins in neuroblastoma and breast cancer cells. HIF-binding and transactivation were detected within MXI1 gene regulatory sequences in the vicinity of th…
High-Performance PCR for Alleles Discrimination of Chromo-Helicase-DNA Binding Protein (CHD1) Gene in Bird Sexing
2023
Genetic analyses aiming at assessing the presence of specific sequences or alleles are often carried out by PCR. Sexing of most birds is nowadays based on PCR with “universal” primers and relies on the assessment of the presence of the sex-linked CHD1-Z and -W alleles. The entire workflow is relatively time-consuming, especially for batch analyses, whereas methods that allow carrying out the entire procedure in a short time are highly desirable. The only method for outdoor analyses reported so far relies on LAMP; however; it fails to work properly in Procellariiformes. Besides improving the LAMP test; we have developed a PCR-based DNA amplification procedure (named high-performance PCR); wh…
Mutational analysis of eggplant latent viroid RNA processing in Chlamydomonas reinhardtii chloroplast.
2009
Viroids of the family Avsunviroidae, such as eggplant latent viroid (ELVd), contain hammerhead ribozymes and replicate in the chloroplasts of the host plant through an RNA-based symmetrical rolling-circle mechanism in which oligomeric RNAs of both polarity are processed to monomeric linear RNAs (by cleavage) and to monomeric circular RNAs (by ligation). Using an experimental system consisting of transplastomic lines of the alga Chlamydomonas reinhardtii, a mutational analysis of sequence and structural elements in the ELVd molecule that are involved in transcript processing in vivo in a chloroplastic context was carried out. A collection of six insertion and three deletion ELVd mutants was …
Forensic mtDNA hair analysis excludes a dog from having caused a traffic accident
1999
A dog was suspected of having caused a traffic accident. Three hair fragments were recovered from the damaged car and subjected to DNA sequence analysis of the canine mitochondrial D-loop control region. The results were compared to saliva and hair samples from the alleged dog, as well as to control hair samples from four unrelated dogs of different breeds. Two sequence types exhibiting five nucleotide differences in a 377 bp fragment were identified among the four controls. Whereas the evidence hair fragment was identical to the type 1 control sequence, the alleged dog shared the type 2 control sequence except for one position. Thus the dog could be excluded as the origin of the hair fragm…
The Sea Urchin sns5 Chromatin Insulator Improves the Likelihood of Lentiviral Vectors in Erythroid Milieu By Organizing an Independent Chromatin Doma…
2015
Abstract Retroviral vectors are currently the most suitable vehicles for therapeutic gene transfer in hematopoietic stem cells. However, these vectors are known to integrate rather randomly throughout the genome, suffering the so called chromosomal position effects (PE). Such a critical occurrence most probably depends upon the ability of heterochromatin to spread in the inserted vector sequences. Moreover, the use of transgenes imply genotoxicity effects, since the cis-regulatory sequences harbored by the vector can disturb the proper transcription of the resident genes neighboring the integration site, potentially leading to malignant transformation. Due to their enhancer blocker activity…
Spectral function of fermions in a highly occupied non-Abelian plasma
2022
We develop a method to obtain fermion spectral functions non-perturbatively in a non-Abelian gauge theory with high occupation numbers of gauge fields. After recovering the free field case, we extract the spectral function of fermions in a highly occupied non-Abelian plasma close to its non-thermal fixed point, i.e., in a self-similar regime of the non-equilibrium dynamics. We find good agreement with hard loop perturbation theory for medium-induced masses, dispersion relations and quasiparticle residues. We also extract the full momentum dependence of the damping rate of the collective excitations.
Flow perturbations: a tool to study and characterize heterogeneous deformation
2005
The classification of the myriad of small-scale structures that are used in tectonic analysis is presently based on their geometry, which makes it difficult to discover transitions and groups amongst them. An alternative would be to classify structures according to the flow type by which they form, but this is difficult. Although most structures form by heterogeneous flow, modelling studies are often focussed on bulk homogeneous flow, since the mathematical treatment of heterogeneous flow is cumbersome. Also, heterogeneous deformation patterns seem to occur in as many types as there are small-scale structures. This paper introduces the use of the geometry of flow perturbations to improve ou…
Hepatitis B virus assembly is sensitive to changes in the cytosolic S loop of the envelope proteins.
2000
Among the three related L, M, and S envelope proteins of the hepatitis B virus (HBV), the L and S polypeptides are required for virion production. Whereas the pivotal function of the pre-S region of L in nucleocapsid envelopment has been established, the contribution of its S domain and the S protein is less clear. In this study, we evaluated the role of the cytosolic S loop, common to L and S, in HBV assembly by performing mutagenesis experiments. To distinguish between the effect of the mutations on either envelope or virion formation, we investigated the ability of the mutants to assemble into secretable subviral empty envelopes and to replace the wild-type proteins in virion maturation,…
The origin of the X-ray-emitting plasma in the eastern edge of the Cygnus Loop
2010
The Cygnus Loop is interacting with a protrusion of the cavity wall in its eastern edge (the XA region), where the X-ray emission is very bright. The complexity of the environment and the non-linear physical processes of the shock-cloud interaction make the origin of the X-ray emission still not well understood. Our purpose is to understand the physical origin of the X-ray emission in the XA region, addressing, in particular, the role of thermal conduction in the interaction process. We analyzed two XMM-Newton data sets, performing image analysis and spatially resolved spectral analysis on a set of homogeneous regions. We applied a recently developed diagnostic tool to compare spectral anal…
Evidence of nonthermal particles in coronal loops heated impulsively by nanoflares
2014
The physical processes causing energy exchange between the Sun's hot corona and its cool lower atmosphere remain poorly understood. The chromosphere and transition region (TR) form an interface region between the surface and the corona that is highly sensitive to the coronal heating mechanism. High resolution observations with the Interface Region Imaging Spectrograph (IRIS) reveal rapid variability (about 20 to 60 seconds) of intensity and velocity on small spatial scales at the footpoints of hot dynamic coronal loops. The observations are consistent with numerical simulations of heating by beams of non-thermal electrons, which are generated in small impulsive heating events called "corona…