Search results for "metadata"
showing 10 items of 117 documents
The SISAL database: a global resource to document oxygen and carbon isotope records from speleothems
2018
Stable isotope records from speleothems provide information on past climate changes, most particularly information that can be used to reconstruct past changes in precipitation and atmospheric circulation. These records are increasingly being used to provide “out-of-sample” evaluations of isotope-enabled climate models. SISAL (Speleothem Isotope Synthesis and Analysis) is an international working group of the Past Global Changes (PAGES) project. The working group aims to provide a comprehensive compilation of speleothem isotope records for climate reconstruction and model evaluation. The SISAL database contains data for individual speleothems, grouped by cave system. Stable isotopes of oxyg…
Whole genome sequencing data and de novo draft assemblies for 66 teleost species
2017
Teleost fishes comprise more than half of all vertebrate species, yet genomic data are only available for 0.2% of their diversity. Here, we present whole genome sequencing data for 66 new species of teleosts, vastly expanding the availability of genomic data for this important vertebrate group. We report on de novo assemblies based on low-coverage (9–39×) sequencing and present detailed methodology for all analyses. To facilitate further utilization of this data set, we present statistical analyses of the gene space completeness and verify the expected phylogenetic position of the sequenced genomes in a large mitogenomic context. We further present a nuclear marker set used for phylogenetic…
GrassPlot – a database of multi-scale plant diversity in Palaearctic grasslands
2018
GrassPlot is a collaborative vegetation-plot database organised by the Eurasian Dry Grassland Group (EDGG) and listed in the Global Index of Vegetation-Plot Databases (GIVD ID EU-00-003). GrassPlot collects plot records (relevés) from grasslands and other open habitats of the Palaearctic biogeographic realm. It focuses on precisely delimited plots of eight standard grain sizes (0.0001; 0.001; ... 1,000 m²) and on nested-plot series with at least four different grain sizes. The usage of GrassPlot is regulated through Bylaws that intend to balance the interests of data contributors and data users. The current version (v. 1.00) contains data for approximately 170,000 plots of different sizes a…
The Global Naturalized Alien Flora (GloNAF) database.
2019
This dataset provides the Global Naturalized Alien Flora (GloNAF) database, ver-sion 1.2. Glo NAF represents a data compendium on th e occurrence and identit y of naturalizedalien vascular plant taxa across geographic regions (e.g. countries, states, provinces, districts,islands) around the globe. The dataset includes 13,939 taxa and covers 1,029 regions (including381 islands). The dataset is based on 210 data sources. For each ta x on-b y-region combination, wepr ovide information on whether the tax on is consider ed to be naturalized in the specific region(i.e. has established self-sustaining popula tions in the wild). Non-native taxa are marked as“alien”, when it is not clear whether the…
Self-validating bundles for flexible data access control
2016
Modern cloud-based services offer free or low-cost content sharing with significant advantages for the users but also new issues in privacy and security. To protect sensitive contents (i.e., copyrighted, top secret, and personal data) from the unauthorized access, sophisticated access management systems or/and decryption schemes have been proposed, generally based on trusted applications at client side. These applications work also as access controllers, verifying specific permissions and restrictions accessing user’s resources. We propose secure bundles (S-bundles), which encapsulate a behavioral model (provided as bytecode) to define versatile stand-alone access controllers and encoding/d…
Eawag-Soil in enviPath: a new resource for exploring regulatory pesticide soil biodegradation pathways and half-life data.
2017
Developing models for the prediction of microbial biotransformation pathways and half-lives of trace organic contaminants in different environments requires as training data easily accessible and sufficiently large collections of respective biotransformation data that are annotated with metadata on study conditions. Here, we present the Eawag-Soil package, a public database that has been developed to contain all freely accessible regulatory data on pesticide degradation in laboratory soil simulation studies for pesticides registered in the EU (282 degradation pathways, 1535 reactions, 1619 compounds and 4716 biotransformation half-life values with corresponding metadata on study conditions)…
Nuevas vías de depósito, nuevos proyectos: consolidación del repositorio institucional RODERIC
2017
El objetivo de este artículo es dar a conocer los nuevos proyectos del repositorio institucional de la Universitat de València, RODERIC, así como las nuevas vías de depósito de documentos de investigación. Para ello, se analizan las distintas actuaciones dentro del apartado de investigación del repositorio. En primer lugar, las centradas en el área de revistas editadas en la UV, los proyectos sobre digitalización de tesis retrospectivas y publicación de tesis corrientes, y finalmente la integración del sistema CRIS con el repositorio. Se acaba con la descripción de una serie de mejoras que se prevén están disponibles en la segunda mitad de 2013. The aim of this paper is to present new proje…
Managing Multi-center Flow Cytometry Data for Immune Monitoring.
2014
With the recent results of promising cancer vaccines and immunotherapy 1 – 5 , immune monitoring has become increasingly relevant for measuring treatment-induced effects on T cells, and an essential tool for shedding light on the mechanisms responsible for a successful treatment. Flow cytometry is the canonical multi-parameter assay for the fine characterization of single cells in solution, and is ubiquitously used in pre-clinical tumor immunology and in cancer immunotherapy trials. Current state-of-the-art polychromatic flow cytometry involves multi-step, multi-reagent assays followed by sample acquisition on sophisticated instruments capable of capturing up to 20 parameters per cell at a…
Towards a Hierarchical Multitask Classification Framework for Cultural Heritage
2018
Digital technologies such as 3D imaging, data analytics and computer vision opened the door to a large set of applications in cultural heritage. Digital acquisition of a cultural assets takes nowadays a couple of seconds thanks to the achievements in 2D and 3D acquisition technologies. However, enriching these cultural assets with labels and relevant metadata is still not fully automatized especially due to their nature and specificities. With the recent publication of several cultural heritage datasets, many researchers are tackling the challenge of effectively classifying and annotating digital heritage. The challenges that are often addressed are related to visual recognition and image c…
Grapevine and wine metabolomics-based guidelines for fair data and metadata management
2021
In the era of big and omics data, good organization, management, and description of experimental data are crucial for achieving high-quality datasets. This, in turn, is essential for the export of robust results, to publish reliable papers, make data more easily available, and unlock the huge potential of data reuse. Lately, more and more journals now require authors to share data and metadata according to the FAIR (Findable, Accessible, Interoperable, Reusable) principles. This work aims to provide a step-by-step guideline for the FAIR data and metadata management specific to grapevine and wine science. In detail, the guidelines include recommendations for the organization of data and meta…