Search results for "mismatch"

showing 10 items of 345 documents

Natural Selection Fails to Optimize Mutation Rates for Long-Term Adaptation on Rugged Fitness Landscapes

2008

The rate of mutation is central to evolution. Mutations are required for adaptation, yet most mutations with phenotypic effects are deleterious. As a consequence, the mutation rate that maximizes adaptation will be some intermediate value. Here, we used digital organisms to investigate the ability of natural selection to adjust and optimize mutation rates. We assessed the optimal mutation rate by empirically determining what mutation rate produced the highest rate of adaptation. Then, we allowed mutation rates to evolve, and we evaluated the proximity to the optimum. Although we chose conditions favorable for mutation rate optimization, the evolved rates were invariably far below the optimu…

0106 biological sciencesMutation rateTime FactorsDigital organismsFitness landscapeQH301-705.5Biology010603 evolutionary biology01 natural sciencesCellular and Molecular Neuroscience03 medical and health sciences0302 clinical medicineGeneticsComputer SimulationBiology (General)Selection GeneticMolecular BiologyEcology Evolution Behavior and Systematics030304 developmental biology0303 health sciencesEvolutionary BiologyNatural selectionEcologyModels GeneticComputational Biology15. Life on landAdaptation PhysiologicalBiological EvolutionComputational Biology/Evolutionary ModelingReplication fidelityAsexual populationsEvolvabilityComputational Theory and MathematicsEvolutionary biologyModeling and SimulationViral evolutionMutation (genetic algorithm)MutationDNA Mismatch repairAdaptationAvida030217 neurology & neurosurgeryResearch Article
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New insight into the colonization processes of common voles: inferences from molecular and fossil evidence.

2008

Biologie et Gestion des Populations, Campus International de Baillarguet, Montferrier/Lez, FranceElucidating the colonization processes associated with Quaternary climatic cycles is important in order to understand the distribution of biodiversity and the evolutionary potential of temperate plant and animal species. In Europe, general evolutionary scenarios have been defined from genetic evidence. Recently, these scenarios have been challenged with genetic as well as fossil data. The origins of the modern distributions of most temperate plant and animal species could predate the Last Glacial Maximum. The glacial survival of such populations may have occurred in either southern (Mediterranea…

0106 biological sciences[ SDE.BE.BIOD ] Environmental Sciences/Biodiversity and Ecology/domain_sde.be.biodBiodiversitylcsh:Medicine[SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics Phylogenetics and taxonomy01 natural sciencesbiodiversitéEvolutionary Biology/Animal GeneticsMaximum-LikelihoodControl RegionGlacial periodévolutionlcsh:SciencePhylogenyévolution biologiqueMismatch Distributionchangement climatique0303 health sciencesMultidisciplinarybiologyArvicolinaeFossilsEcology[SDV.BID.EVO]Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE]mammifèreFossil RecordCytochromes bEuropePhylogeographyHabitatResearch ArticleEvolutionary Biology/PaleontologyGene FlowClimatic ChangesGenetic SpeciationcolonisationMolecular DatingCytochrome b010603 evolutionary biologyQuaternary03 medical and health sciencesAnimalsMicrotusDemography030304 developmental biologyBayesian ApproachEvolutionary Biology/Evolutionary and Comparative GeneticsrongeurHuman evolutionary geneticslcsh:RGenetic Variation[SDV.BBM.BM]Life Sciences [q-bio]/Biochemistry Molecular Biology/Molecular biologySequence Analysis DNAmicrotus arvalis15. Life on landbiology.organism_classificationBiogeographic TraitsPhylogeographyGenetic SpeciationBiological dispersalAnimal Migrationlcsh:QCommon Vole
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Effects of food abundance and early clutch predation on reproductive timing in a high Arctic shorebird exposed to advancements in arthropod abundance.

2016

12 pages; International audience; Climate change may influence the phenology of organisms unequally across trophic levels and thus lead to phenological mismatches between predators and prey. In cases where prey availability peaks before reproducing predators reach maximal prey demand, any negative fitness consequences would selectively favor resynchronization by earlier starts of the reproductive activities of the predators. At a study site in northeast Greenland, over a period of 17 years, the median emergence of the invertebrate prey of Sanderling Calidris alba advanced with 1.27 days per year. Yet, over the same period Sanderling did not advance hatching date. Thus, Sanderlings increasin…

0106 biological sciencesfood.ingredientBird migrationchick growthPOPULATION-SIZEBird migrationNEST PREDATIONBREEDING PHENOLOGYBiology010603 evolutionary biology01 natural sciencesphenology010605 ornithologyPredation[ SDV.EE ] Life Sciences [q-bio]/Ecology environmentnest survivalfoodCalidris alba (Pallastrophic mismatchAbundance (ecology)INTERANNUAL VARIATIONCHANGING CLIMATEtimingNORTHEAST GREENLANDEcology Evolution Behavior and SystematicsNature and Landscape ConservationTrophic levelOriginal ResearchCalidris albatrophic interactions[SDV.EE]Life Sciences [q-bio]/Ecology environmentCalidris alba (Pallas 1764) [sanderling][ SDE.BE ] Environmental Sciences/Biodiversity and EcologyCLIMATE-CHANGEEcologyPhenologyEcologyHatchingSNOW-COVER1764) [sanderling]trophic mismatch.PHENOLOGICAL MISMATCHESCalidrisclimate changeMIGRATORY BIRDSCalidris alba [sanderling][SDE.BE]Environmental Sciences/Biodiversity and EcologyArctic ecology
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Fossorial but widespread: the phylogeography of the common spadefoot toad (Pelobates fuscus), and the role of the Po Valley as a major source of gene…

2007

International audience; Pelobates fuscus is a fossorial amphibian that inhabits much of the European plain areas. To unveil traces of expansion and contraction events of the species' range, we sequenced 702 bp of the mitochondrial cytochrome b gene. To infer the population history we applied phylogeographical methods, such as nested clade phylogeographical analysis (NCPA), and used summary statistics to analyse population structure under a neutral model of evolution. Populations were assigned to different drainage systems and we tested hypotheses of explicit refugial models using information from analysis of molecular variance, nucleotide diversity, effective population size estimation, NCP…

0106 biological scienceshaplotypesPelobates fuscuspopulation-structuremismatch distribution01 natural sciencesNucleotide diversityCoalescent theorypostglacial range expansionEffective population sizePhylogeny[SDV.EE]Life Sciences [q-bio]/Ecology environment0303 health scienceseducation.field_of_studybiologyGeographyEcologyFossilssummarycoalescentCytochromes bEuropeMitochondrial-dnastatisticsAnuracladistic-analysisPopulationPelobates[SDV.BID]Life Sciences [q-bio]/Biodiversitynucleotide diversity010603 evolutionary biology03 medical and health sciencesstatistical phylogeographygeographical-distributionGeneticsVicarianceAnimalseducationEcology Evolution Behavior and Systematics030304 developmental biologyPopulation DensityinferenceDNA15. Life on landbiology.organism_classificationPhylogeographyspeciationEvolutionary biologyphylogeographical analysis[SDE.BE]Environmental Sciences/Biodiversity and EcologydivergencePelobates cultripesMolecular ecology
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Five-years-long effects of the Italian policies for photovoltaics on the energy demand coverage of grid-connected PV systems installed in urban conte…

2016

Abstract The paper examines the responsiveness of the electricity demand coverage in urban contexts to the changes in the Italian policies for PV systems. The morphological configuration of building roofs according to the number of covered flats, annual data of PV generation and electricity consumptions were considered in the transition from the feed-in tariff (FIT) mechanism to the tax credits scheme currently in force. With the aim of assessing the changes over time in three representative cities, the fluctuations both in the premiums for the produced electricity and the tax credits applied to the PV system costs were observed from July 2010 to February 2016. Furthermore, the main time-va…

020209 energyTariffEnergy coverage02 engineering and technologyTax creditIndustrial and Manufacturing EngineeringTax creditPhotovoltaics0202 electrical engineering electronic engineering information engineeringEconomicsElectrical and Electronic EngineeringFeed-in tariffCivil and Structural EngineeringSettore ING-IND/11 - Fisica Tecnica Ambientalebusiness.industryMechanical EngineeringPhotovoltaic systemBuilding and ConstructionEnvironmental economics021001 nanoscience & nanotechnologyGridPollutionFeed-in tariffGeneral EnergyCommerceMismatchEnergy (all)Electricity0210 nano-technologybusinessElectricity retailingPhotovoltaic
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Detecting differences with magnetoencephalography of somatosensory processing after tactile and electrical stimuli.

2018

Abstract Background Deviant stimuli within a standard, frequent stimulus train induce a cortical somatosensory mismatch response (SMMR). The SMMR reflects the brain’s automatic mechanism for the detection of change in a somatosensory domain. It is usually elicited by electrical stimulation, which activates nerve fibers and receptors in superficial and deep skin layers, whereas tactile stimulation is closer to natural stimulation and activates uniform fiber types. We recorded SMMRs after electrical and tactile stimuli. Method 306-channel magnetoencephalography recordings were made with 16 healthy adults under two conditions: electrical (eSMMR) and tactile (tSMMR) stimulations. The SMMR proto…

0301 basic medicineAdultMaleAdolescenthuman sensory cortexStimulationStimulus (physiology)Somatosensory systemta3112Tactile stimulikosketusaisti03 medical and health sciencesYoung Adult0302 clinical medicineEvoked Potentials SomatosensoryPhysical StimulationmedicineHumansaivotutkimuscutaneous nerve stimulationSensory stimulation therapyMEGmedicine.diagnostic_testbusiness.industryfunctional brain imagingGeneral NeuroscienceMagnetoencephalographySignal Processing Computer-AssistedMagnetoencephalographySomatosensory Cortexmismatch responseElectric StimulationLong latency030104 developmental biologyTouch Perceptiontactile stimulationFemalebusinessNeuroscienceTactile processing030217 neurology & neurosurgeryärsykkeetJournal of neuroscience methods
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Cognitive network hyperactivation and motor cortex decline correlate with ALS prognosis.

2021

We aimed to quantitatively characterize progressive brain network disruption in Amyotrophic Lateral Sclerosis (ALS) during cognition using the mismatch negativity (MMN), an electrophysiological index of attention switching. We measured the MMN using 128-channel EEG longitudinally (2-5 timepoints) in 60 ALS patients and cross-sectionally in 62 healthy controls. Using dipole fitting and linearly constrained minimum variance beamforming we investigated cortical source activity changes over time. In ALS, the inferior frontal gyri (IFG) show significantly lower baseline activity compared to controls. The right IFG and both superior temporal gyri (STG) become progressively hyperactive longitudina…

0301 basic medicineAdultMaleAgingmedicine.medical_specialtyMismatch negativityPrefrontal CortexElectroencephalographyAudiologybehavioral disciplines and activities03 medical and health sciences0302 clinical medicineCognitionmedicineHumansAttentionCognitive DysfunctionAmyotrophic lateral sclerosisAgedAged 80 and overHyperactivationmedicine.diagnostic_testbusiness.industryGeneral NeuroscienceAmyotrophic Lateral SclerosisMotor CortexCognitionElectroencephalographyMiddle Agedmedicine.diseasePrognosisTemporal LobeElectrophysiology030104 developmental biologymedicine.anatomical_structureCross-Sectional StudiesDisinhibitionFemaleNeurology (clinical)Geriatrics and Gerontologymedicine.symptombusiness030217 neurology & neurosurgeryDevelopmental BiologyMotor cortexNeurobiology of aging
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Long-term physical activity modulates brain processing of somatosensory stimuli: Evidence from young male twins.

2016

Leisure-time physical activity is a key contributor to physical and mental health. Yet the role of physical activity in modulating cortical function is poorly known. We investigated whether precognitive sensory brain functions are associated with the level of physical activity. Physical activity history (3-yr-LTMET), physiological measures and somatosensory mismatch response (sMMR) in EEG were recorded in 32 young healthy twins. In all participants, 3-yr-LTMET correlated negatively with body fat%, r = −0.77 and positively with VO2max, r = 0.82. The fat% and VO2max differed between 15 physically active and 17 inactive participants. Trend toward larger sMMR was seen in inactive compared to ac…

0301 basic medicineAdultMalehuman electrophysiologyFITNESSMISMATCH NEGATIVITY MMN515 PsychologyPhysical activityMonozygotic twinprecognitive brain functionPhysical exerciseSensory systemCHILDRENGatingElectroencephalographyMotor ActivitySomatosensory system03 medical and health sciences0302 clinical medicinephysical exercisemedicineEVOKED-POTENTIALSHumansHealthy Lifestyleta315Evoked PotentialsExerciseYoung malemedicine.diagnostic_testLATENCYGeneral NeuroscienceMEMORYta3141ADULTSSomatosensory Cortex16. Peace & justice3142 Public health care science environmental and occupational healthta3124030104 developmental biologyNeuropsychology and Physiological PsychologyDISCRIMINATIONFemalePsychologyNeurosciencesomatosensory mismatch response030217 neurology & neurosurgeryRESPONSESBiological psychology
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CD63 and Dna Mismatch Repair Protein Expression in Prostate Cancer

2021

Abstract Protein expression levels in immunohistochemistry and molecular biomarkers have been reported for their ability to predict recurrence, progression, development of metastases, and patient survival. The molecular features in low- and high-grade prostate cancer can differ and influence treatment decision and prognosis. The objective of the current study was to compare the expression of exosomal biomarkers CD63 and mismatch repair proteins (MSH2, MSH6, MLH1, and PMS2) by immunohistochemistry (IHC) in tissue of patients with prostate cancer and benign hyperplasia. Altogether, 62 patients with prostate acinar adenocarcinoma and 20 patients with prostate benign hyperplasia were enrolled i…

0301 basic medicineCD63business.industrymedicine.diseasedigestive system diseases03 medical and health sciencesProstate cancer030104 developmental biology0302 clinical medicine030220 oncology & carcinogenesisCancer researchMedicinebusinessDNA Mismatch Repair ProteinProceedings of the Latvian Academy of Sciences. Section B. Natural, Exact, and Applied Sciences.
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Lack of association between screening interval and cancer stage in Lynch syndrome may be accounted for by over-diagnosis; a prospective Lynch syndrom…

2019

Background Recent epidemiological evidence shows that colorectal cancer (CRC) continues to occur in carriers of pathogenic mismatch repair (path_MMR) variants despite frequent colonoscopy surveillance in expert centres. This observation conflicts with the paradigm that removal of all visible polyps should prevent the vast majority of CRC in path_MMR carriers, provided the screening interval is sufficiently short and colonoscopic practice is optimal. Methods To inform the debate, we examined, in the Prospective Lynch Syndrome Database (PLSD), whether the time since last colonoscopy was associated with the pathological stage at which CRC was diagnosed during prospective surveillance. Path_MMR…

0301 basic medicineCOLONOSCOPIC SURVEILLANCEColorectal cancerColonoscopy030105 genetics & hereditycomputer.software_genreFAMILIESCOLORECTAL-CANCERBreast cancer screening0302 clinical medicine610 Medical sciences MedicineEpidemiologytähystysStage (cooking)Hereditary nonpolyposis colorectal cancerMUTATIONGenetics (clinical)RISKSurveillanceDatabasemedicine.diagnostic_testIncidence (epidemiology)Colonoscopylcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogensLynch syndrome3. Good healthOncology030220 oncology & carcinogenesisendoskopiaScreeningsyöpätauditkoloskopiamedicine.medical_specialtylcsh:QH426-4703122 Cancers610suolistosyövätmikrosatelliititlcsh:RC254-282Mismatch repair03 medical and health sciencesCàncer colorectalmedicineEndoscòpiaLynchin oireyhtymäperinnölliset tauditseulontatutkimusbusiness.industryResearchColonoscòpiaMicrosatellite instabilityEndoscopyDNAdiagnostiikkamedicine.diseaseColorectal cancerdigestive system diseasesHereditary cancerADENOMAlcsh:GeneticsLynch syndromeOver-diagnosisMicrosatellite instabilitytarkkailubusinesscomputer
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