Search results for "model."

showing 10 items of 23664 documents

Landscape-scale simulation experiments test Romanian and Swiss management guidelines for mountain pasture-woodland habitat diversity

2016

Distinct guidelines have been proposed in Romania and Switzerland for the management of pasture woodlands that either focused on the regulation of grazing pressure (Romanian production perspective) or overall tree cover (Swiss conservation perspective). However, the landscape structural diversity and the cover of forest-grassland ecotones, which are both crucial for nature conservation value, were not explicitly considered. We aimed to compare the country-specific management guidelines regarding their efficiency for the conservation of the structurally diverse forest-grassland mosaics in the light of recent land-use and climate change. In strategic simulation experiments using the process-b…

0106 biological sciencesSouthern CarpathiansClimate change adapted managementClimate changeWoodland010603 evolutionary biology01 natural sciencesForest-grassland ecotoneGrazing pressureJura MountainsForest-grassland mosaicGrazingComputingMilieux_MISCELLANEOUS2. Zero hungerTree canopy[ SDE.BE ] Environmental Sciences/Biodiversity and EcologyAgroforestryEcological ModelingGlobal warming15. Life on landLow-intensity grazing010601 ecologyGeographyHabitat13. Climate actionConservation status[SDE.BE]Environmental Sciences/Biodiversity and Ecology
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Life-cycle switching and coexistence of species with no niche differentiation.

2011

The increasing evidence of coexistence of cryptic species with no recognized niche differentiation has called attention to mechanisms reducing competition that are not based on niche-differentiation. Only sex-based mechanisms have been shown to create the negative feedback needed for stable coexistence of competitors with completely overlapping niches. Here we show that density-dependent sexual and diapause investment can mediate coexistence of facultative sexual species having identical niches. We modelled the dynamics of two competing cyclical parthenogens with species-specific density-dependent sexual and diapause investment and either equal or different competitive abilities. We show th…

0106 biological sciencesSpecies complexEcological Metricsmedia_common.quotation_subjectlcsh:MedicineMarine and Aquatic SciencesMarine BiologyDiapauseBiology010603 evolutionary biology01 natural sciencesCompetition (biology)Sexual Behavior AnimalTheoretical EcologyAnimalslcsh:ScienceBiologymedia_commonCoexistence theoryEcological nicheFreshwater EcologyFacultativeMultidisciplinaryEcologyPopulation BiologyEcology010604 marine biology & hydrobiologylcsh:RNiche differentiationSpecies DiversityBiodiversityModels TheoreticalSexual reproductionSpecies InteractionsCommunity EcologyEarth Scienceslcsh:QPopulation EcologyResearch ArticlePloS one
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Morphological traits predict host-tree specialization in wood-inhabiting fungal communities

2020

Tree species is one of the most important determinants of wood-inhabiting fungal community composition, yet its relationship with fungal reproductive and dispersal traits remains poorly understood. We studied fungal communities (total of 657 species) inhabiting broadleaved and coniferous dead wood (total of 192 logs) in 12 semi-natural boreal forests. We utilized a trait-based hierarchical joint species distribution model to examine how the relationship between dead wood quality and species occurrence correlates with reproductive and dispersal morphological traits. Broadleaved trees had higher species richness than conifers, due to discomycetoids and pyrenomycetoids specializing in them. Re…

0106 biological sciencesSpecies distributionDIVERSITYConiferousPlant Sciencebroadleavedisäntälajitfungal communities01 natural sciencespuulajitLOGSBroadleavedspecializationtree speciesFruit bodyDISPERSALRICHNESSmorphologylehtipuut11832 Microbiology and virologyEcologyEcological ModelingTaigaDECAYING FUNGIlahottajasienetFunctional traitDead wood1181 Ecology evolutionary biologyTree speciesSpecializationTree speciesMorphologyfruit bodyBiologysporehavupuutSPRUCEECOLOGY010603 evolutionary biologymorfologiaGRADIENTconiferousfunctional traitlahopuutEcology Evolution Behavior and Systematicsitiötdead woodHost (biology)Species diversitySpore15. Life on landSporePATTERNSBiological dispersalSpecies richness010606 plant biology & botany
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Escaping the evolutionary trap: Can size-related contest advantage compensate for juvenile mortality disadvantage when parasitoids develop in unnatur…

2021

Abstract The quality of hosts for a parasitoid wasp may be influenced by attributes such as host size or species, with high quality for successful development usually coincident with high quality for larger offspring. This is not always the case: for the Scelionid wasp Trissolcus basalis, oviposition in eggs of the Brown Marmorated Stink Bug, Halyomorpha halys, rather than of the normal host, the Southern Green Stink Bug, Nezara viridula, leads to lower offspring survival, but survivors can be unusually large. Adult female T. basalis engage in contests for host access. As larger contestants are typically favoured in contests between parasitoids, the larger size of surviving offspring may co…

0106 biological sciencesStatistics and ProbabilityAvian clutch sizeHost specieGreen stink bugWaspsZoology010603 evolutionary biology01 natural sciencesReproductive valueGeneral Biochemistry Genetics and Molecular BiologyParasitoid waspHeteropteraAnimalsBrown marmorated stink bugEvolutionarily stable strategyGeneral Immunology and MicrobiologybiologySize advantageHost (biology)AnimalApplied MathematicsReproductionfungiGeneral MedicineTrissolcus basalibiology.organism_classificationBiological EvolutionEurope010602 entomologyHalyomorpha halyEvolutionary trapNezara viridulaModeling and SimulationOwnership advantageBrown Marmorated Stink BugFemaleReproductive valueGeneral Agricultural and Biological SciencesJournal of theoretical biology
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Dynamic complexities in host-parasitoid interaction

1999

In the 1970s ecological research detected chaos and other forms of complex dynamics in simple population dynamics models, initiating a new research tradition in ecology. However, the investigations of complex population dynamics have mainly concentrated on single populations and not on higher dimensional ecological systems. Here we report a detailed study of the complicated dynamics occurring in a basic discrete-time model of host-parasitoid interaction. The complexities include (a) non-unique dynamics, meaning that several attractors coexist, (b) basins of attraction (defined as the set of the initial conditions leading to a certain type of an attractor) with fractal properties (pattern of…

0106 biological sciencesStatistics and ProbabilityEcology (disciplines)PopulationChaoticBiologyBifurcation diagram010603 evolutionary biology01 natural sciencesGeneral Biochemistry Genetics and Molecular Biologylaw.invention03 medical and health sciencesFractalControl theorylawIntermittencyAttractorQuantitative Biology::Populations and EvolutionStatistical physicseducation030304 developmental biology0303 health scienceseducation.field_of_studyGeneral Immunology and MicrobiologyApplied MathematicsGeneral MedicineComplex dynamicsModeling and SimulationGeneral Agricultural and Biological SciencesJournal of theoretical biology
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Variational Approximations for Generalized Linear Latent Variable Models

2017

Generalized linear latent variable models (GLLVMs) are a powerful class of models for understanding the relationships among multiple, correlated responses. Estimation, however, presents a major challenge, as the marginal likelihood does not possess a closed form for nonnormal responses. We propose a variational approximation (VA) method for estimating GLLVMs. For the common cases of binary, ordinal, and overdispersed count data, we derive fully closed-form approximations to the marginal log-likelihood function in each case. Compared to other methods such as the expectation-maximization algorithm, estimation using VA is fast and straightforward to implement. Predictions of the latent variabl…

0106 biological sciencesStatistics and ProbabilityMathematical optimizationBinary numberfactor analysisLatent variableordination010603 evolutionary biology01 natural sciences010104 statistics & probabilityItem response theoryDiscrete Mathematics and CombinatoricsApplied mathematicslatent trait0101 mathematicsLatent variable modelMathematicsta112item response theoryFunction (mathematics)Latent class modelMarginal likelihoodfaktorianalyysipappisvihkimysmultivariate analysisvariational approximationStatistics Probability and UncertaintyCount data
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Environmental Variability and Semelparity vs. Iteroparity as Life Histories

2002

Research on the evolution of life histories addresses the topic of fitness trade-offs between semelparity (reproducing once in a lifetime) and iteroparity (repeated reproductive bouts per lifetime). Bulmer (1994) derived the relationship v+P(A)<1 (P(A) is the adult survival;vb(S) and b(S) are the offspring numbers for iteroparous and semelparous breeding strategies, respectively), under which a resident semelparous population cannot be invaded by an iteroparous mutant when the underlying population dynamics are stable. We took Bulmer's population dynamics, and added noise in juvenile and adult survival and in offspring numbers. Long-term coexistence of the two strategies is possible in much…

0106 biological sciencesStatistics and ProbabilityOffspringPopulation DynamicsPopulationBiologyModels Biological010603 evolutionary biology01 natural sciencesGeneral Biochemistry Genetics and Molecular BiologyAnimalsJuvenileeducationSurvival rateEcosystemSemelparity and iteroparityeducation.field_of_studyGeneral Immunology and MicrobiologyReproductionApplied MathematicsGeneral MedicineBiological evolutionBiological EvolutionSurvival Rate010601 ecologyParityModeling and SimulationGeneral Agricultural and Biological SciencesDemographyJournal of Theoretical Biology
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Effects of patch number and dispersal patterns on population dynamics and synchrony.

2000

In this paper, we examine the effects of patch number and different dispersal patterns on dynamics of local populations and on the level of synchrony between them. Local population renewal is governed by the Ricker model and we also consider asymmetrical dispersal as well as the presence of environmental heterogeneity. Our results show that both population dynamics and the level of synchrony differ markedly between two and a larger number of local populations. For two patches different dispersal rules give very versatile dynamics. However, for a larger number of local populations the dynamics are similar irrespective of the dispersal rule. For example, for the parameter values yielding stab…

0106 biological sciencesStatistics and ProbabilityPopulationPopulation DynamicsBiology010603 evolutionary biology01 natural sciencesPopulation densityModels BiologicalGeneral Biochemistry Genetics and Molecular Biology03 medical and health sciencesQuantitative Biology::Populations and EvolutionAnimalsLocal populationPopulation dynamicseducation030304 developmental biologyPopulation Density0303 health scienceseducation.field_of_studyGeneral Immunology and MicrobiologyEcologyApplied MathematicsHigh intensityDynamics (mechanics)General MedicineRicker modelModeling and SimulationBiological dispersalGeneral Agricultural and Biological SciencesJournal of theoretical biology
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Spatio-Temporal model structures with shared components for semi-continuous species distribution modelling

2017

Abstract Understanding the spatio-temporal dynamism and environmental relationships of species is essential for the conservation of natural resources. Many spatio-temporally sampled processes result in continuous positive [ 0 , ∞ ) abundance datasets that have many zero values observed in areas that lie outside their optimum niche. In such cases the most common option is to use two-part or hurdle models, which fit independent models and consequently independent environmental effects to occurrence and conditional-to-presence abundance. This may be correct in some cases, but not as much in others where the detection probability is related to the abundance. The aim of this work is to infer the…

0106 biological sciencesStatistics and ProbabilityProcess (engineering)Computer science010604 marine biology & hydrobiologyNicheManagement Monitoring Policy and Lawcomputer.software_genre01 natural sciencesNatural resourceEnvironmental niche modelling010104 statistics & probabilityAbundance (ecology)Component (UML)Data miningDynamism0101 mathematicsComputers in Earth SciencescomputerBayesian krigingSpatial Statistics
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Seed Bank in Annuals: Competition Between Banker and Non-banker Morphs

2002

Seed bank is a plant life history strategy against the unpredictability of the biotic and the abiotic environment. We simulated competition between a seed banking and a non-banking morph of an annual plant. A constant fraction of the banker morph seeds was allocated to the seed bank, where they had a constant mortality and germination rate. All surviving seeds of the non-banker morph germinated in the next generation. The seedlings of both morphs experienced similar density-dependent mortality. Whether one of the morphs wins or the morphs coexist was evaluated from parameter space plots and statistically with logistic regression analysis. All parameters of the model had a significant, nonli…

0106 biological sciencesStatistics and Probabilitygenetic structuresmedia_common.quotation_subjectComputingMethodologies_IMAGEPROCESSINGANDCOMPUTERVISIONGerminationModel parametersBiologyModels Biological010603 evolutionary biology01 natural sciencesGeneralLiterature_MISCELLANEOUSGeneral Biochemistry Genetics and Molecular BiologyPlant lifeCompetition (biology)BotanyEcosystemBiological sciencesEcosystemreproductive and urinary physiologyComputingMethodologies_COMPUTERGRAPHICSmedia_commonAbiotic componentGeneral Immunology and MicrobiologyReproductionApplied MathematicsfungiGeneral Medicine15. Life on landhumanitiesLogistic ModelsAgronomyGerminationModeling and SimulationSeedsAnnual plantGeneral Agricultural and Biological Sciencespsychological phenomena and processes010606 plant biology & botanyJournal of Theoretical Biology
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