Search results for "molecular conformation"

showing 10 items of 376 documents

Fluidity of liposome membranes doped with metalloporphyrins: An ESR study

2008

Changes in membrane fluidity of porphyrin-doped liposomes have been investigated to assess the kinetics of the fluidization process. Metal complexes of tert-butylphenyl mesosubstituted porphyrin, containing ions of Mg, Mn, Fe, Co, Ni and Cu, were used as dopants. Liposomes were obtained by sonication of hen egg yolk lecithin (EYL). Electron paramagnetic resonance (ESR) was applied using two spin probes, TEMPO (2,2,6,6-tetramethylpiperidine- 1-oxyl) and 16-DOXYL-stearic acid [2-ethyl-2-(15-methoxy-15-oxopentadecyl)-4,4- dimethyl-3-oxazolidinyloxyl], localized at different sites within the membrane to determine the spectroscopic parameters: partition (F) and rotation correlation time (τ), rel…

Models MolecularMembrane FluidityMetalloporphyrinsSonicationInorganic chemistryKineticsMolecular ConformationGeneral Biochemistry Genetics and Molecular Biologylaw.inventionEYL LiposomesMetalCyclic N-Oxideschemistry.chemical_compoundlawMembrane fluidityElectron paramagnetic resonanceESRLiposomeChemistryElectron Spin Resonance SpectroscopyPorphyrinKineticsMembranevisual_artLiposomesvisual_art.visual_art_mediumSpin Labels
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Design of Triads for Probing the Direct Through Space Energy Transfers in Closely Spaced Assemblies

2013

Using a selective stepwise Suzuki cross-coupling reaction, two trimers built on three different chromophores were prepared. These trimers exhibit a D(^)A1-A2 structure where the donor D (octa-β-alkyl zinc(II)porphyrin either as diethylhexamethyl, 10a, or tetraethyltetramethyl, 10b, derivatives) through space transfers the S1 energy to two different acceptors, di(4-ethylbenzene) zinc(II)porphyrin (A1; acceptor 1) placed cofacial with D, and the corresponding free base (A2; acceptor 2), which is meso-meso-linked with A1. This structure design allows for the possibility of comparing two series of assemblies, 9a,b (D(^)A1) with 10a,b (D(^)Â1-A2), for the evaluation of the S1 energy transfer for…

Models MolecularMetalloporphyrinsChemistryEnergy transferMolecular Conformationchemistry.chemical_elementFree baseZincChromophoreSpace (mathematics)AcceptorPorphyrinFluorescenceInorganic ChemistryCrystallographychemistry.chemical_compoundEnergy TransferDrug DesignPhysical and Theoretical ChemistryAtomic physicsInorganic Chemistry
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Modification of Nanocrystalline WO3 with a Dicationic Perylene Bisimide: Applications to Molecular Level Solar Water Splitting

2015

[(N,N?-Bis(2-(trimethylammonium)ethylene) perylene 3,4,9,10-tetracarboxylic acid bisimide)(PF6)2] (1) was observed to spontaneously adsorb on nanocrystalline WO3 surfaces via aggregation/hydrophobic forces. Under visible irradiation (? > 435 nm), the excited state of 1 underwent oxidative quenching by electron injection (kinj > 108 s-1) to WO3, leaving a strongly positive hole (Eox ? 1.7 V vs SCE), which allows to drive demanding photo-oxidation reactions in photoelectrochemical cells (PECs). The casting of IrO2 nanoparticles (NPs), acting as water oxidation catalysts (WOCs) on the sensitized electrodes, led to a 4-fold enhancement in photoanodic current, consistent with hole transfer from …

Models MolecularMolecular ConformationNanoparticleImidesPhotochemistryBiochemistryTungstenCatalysisNOCatalysiElectron Transportchemistry.chemical_compoundColloid and Surface ChemistryTheoryofComputation_ANALYSISOFALGORITHMSANDPROBLEMCOMPLEXITYWO3ComputingMethodologies_SYMBOLICANDALGEBRAICMANIPULATIONperylenePhotoelectrochemical cellIrO2Quenching (fluorescence)Chemistry (all)charge transferWaterOxidesGeneral ChemistryPhotoelectrochemical cellPhotochemical ProcessesSolar fuelChemistry (all); Catalysis; Biochemistry; Colloid and Surface ChemistryNanocrystalline materialperylene WO3 charge transfer IrO2MicrosecondchemistryWater SplittingSunlightVISIBLE-LIGHT; ARTIFICIAL PHOTOSYNTHESIS; PHOTOELECTROCHEMICAL CELL; OXIDATION CATALYSTS; ELECTRON-TRANSFER; FABRICATIONNanoparticlesPerylene bisimideWater splittingPeryleneMathematicsofComputing_DISCRETEMATHEMATICS
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Conformational and structural studies of N-methylacetohydroxamic acid and of its mono- and bis-chelated uranium(VI) complexes

2015

The thermodynamics and kinetics of the cis/trans isomerism of N-methylacetohydroxamic acid (NMAH) and its conjugated base (NMA(-)) have been reinvestigated in aqueous media by (1)H NMR spectroscopy. Hindered rotation around the central C-N bond due to electronic delocalization becomes slow enough on the NMR time scale to observe both rotamers in equilibrium in D2O at room temperature. By properly assigning the methyl group resonances, evidence for the prevalence of the E over the Z form is unambiguously provided [K300=[E]/[Z]=2.86(2) and 9.63(5) for NMAH and NMA(-), respectively], closing thereby a long-lasting dispute about the most stable conformer. To that end, calculations of the chemic…

Models MolecularMolecular ConformationX-ray crystal structuresCrystallography X-RayHydroxamic AcidsSpectrum Analysis RamanBiochemistryInorganic Chemistrychemistry.chemical_compoundDelocalized electronReaction rate constantEXSY spectroscopyCoordination ComplexesSpectroscopyConformational isomerismChelating AgentsUranium(VI) complexesChemical shiftWater[CHIM.THEO]Chemical Sciences/Theoretical and/or physical chemistryCrystallographyHydroxamic acidchemistry[ CHIM.THEO ] Chemical Sciences/Theoretical and/or physical chemistryRaman spectroscopyProton NMRQuantum TheoryUraniumDensity functional theoryMethyl group
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Effects of sequence, connectivity, and counter ions in new amide-linked Ru(tpy)2-Re(bpy) chromophores on redox chemistry and photophysics.

2013

New cationic metallo ligands L1-L3 based on bis(terpyridine) ruthenium(II) complexes decorated with differently substituted 2,2'-bipyridines attached via amide groups (5-NHCO-bpy, 4-CONH-bpy, 5-CONH-bpy) were prepared. Coordination of Re(I)Cl(CO)(3) fragments to the bpy unit gives the corresponding bimetallic Ru~Re complexes 1-3. Hydrogen bonds of the bridging amide groups to [PF(6)](-) counterions or to water molecules are observed both in the solid state and in solution. The impact of the amide orientation, the connecting site, and the coordination of counterions on redox and photophysical properties is explored. Both the metallo ligands L1-L3 and the bimetallic complexes 1-3 are emissive…

Models MolecularMolecular Conformationchemistry.chemical_elementPhotochemistryCrystallography X-RayRutheniumlaw.inventionInorganic Chemistrychemistry.chemical_compoundlawAmideOrganometallic CompoundsMoleculePhysical and Theoretical ChemistryElectron paramagnetic resonanceBimetallic stripIonsHydrogen bondLigandPhotochemical ProcessesAmidesRutheniumCrystallographyRheniumchemistryQuantum TheoryTerpyridineOxidation-ReductionInorganic chemistry
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DFT studies on armchair (5, 5) SWCNT functionalization. Modification of selected structural and spectroscopic parameters upon two-atom molecule attac…

2015

Abstract Density functional theory (DFT) studies on adsorption of several gaseous homo- and hetero-diatomic molecules (AB) including H2, O2, N2, NO and CO on external surface of H-capped pristine armchair (5, 5) single-walled carbon nanotube (SWCNT) were conducted. Structures of C70H10 and the corresponding C70H10–AB adducts were fully optimized at the B3LYP/6-311G* level of theory. Calculated HOMO/LUMO energy gaps (Eg), 13C NMR chemical shifts and IR/Raman parameters were analyzed and critically compared with available experimental data. Significant changes of carbon NMR atom chemical shifts (up to −100 ppm) and shielding anisotropies (up to −180 ppm) at sites of addition were observed. Fu…

Models MolecularNanotubeMaterials scienceMagnetic Resonance SpectroscopyIR/RamanMolecular ConformationElectrons02 engineering and technologyCarbon nanotube010402 general chemistrySpectrum Analysis Raman01 natural scienceslaw.inventionsymbols.namesakeComputational chemistrylawSpectroscopy Fourier Transform InfraredMaterials ChemistryMoleculeDFT and GIAO NMRHOMO/LUMO gapPhysical and Theoretical ChemistryHOMO/LUMOSpectroscopyNanotubes CarbonChemical shiftsingle-walled karbon nanotube (SWCNT)Carbon-13 NMR021001 nanoscience & nanotechnologyComputer Graphics and Computer-Aided Design0104 chemical sciencessymbolsPhysical chemistryQuantum TheoryThermodynamicsDensity functional theory0210 nano-technologyRaman spectroscopyabsorptionJournal of Molecular Graphics and Modelling
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Effect of elliptical deformation on molecular polarizabilities of model carbon nanotubes from atomic increments.

2003

The interacting induced dipole polarization model implemented in our program POLAR is used for the calculation of the dipole-dipole polarizability alpha. The method is tested with single-wall carbon nanotube models as a function of nanotube radius and elliptical deformation. The results for polarizability follow the same trend as reference calculations performed with our version of the program PAPID. For the zigzag tubes, the polarizability is found to follow a remarkably simple law, that is, it varies as the inverse of the radius. A dramatic effect is also found with elliptical deformation. It is found that the polarizability and related properties can be modified continuously and reversib…

Models MolecularNanotubeMaterials scienceStatic ElectricityBiomedical EngineeringMolecular ConformationBioengineeringMechanical properties of carbon nanotubesCarbon nanotubeCurvaturelaw.inventionPolarizabilitylawPhysics::Atomic and Molecular ClustersElectrochemistryNanotechnologyGeneral Materials ScienceComputer SimulationPhysics::Atomic PhysicsNanotubes CarbonAtoms in moleculesGeneral ChemistryCondensed Matter PhysicsElasticityDipoleZigzagAtomic physicsJournal of nanoscience and nanotechnology
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Integrated experimental and computational spectroscopy study on the protonation of the α-nitronyl nitroxide radical unit

2011

The stability of the α-nitronyl nitroxide radical unit under acidic conditions is investigated by an integrated experimental UV/Vis spectroscopy and TDDFT study. In the field of molecular magnetism, α-nitronyl nitroxide radicals are important as purely organic spin carriers due to their synthetic versatility. Here, the existence of an intermediate of the protonated α-nitronyl nitroxide radical unit is demonstrated for the first time and a proposed disproportionation reaction is confirmed.

Models MolecularNitroxide mediated radical polymerizationFree RadicalsChemistryMagnetismSpectrum AnalysisRadicalMolecular ConformationGeneral Physics and AstronomyDisproportionationProtonationTime-dependent density functional theoryPhotochemistryCyclic N-OxidesQuantum TheoryProtonsPhysical and Theoretical ChemistrySpectroscopySpin (physics)Phys. Chem. Chem. Phys.
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Solid-state NMR and computational investigation of solvent molecule arrangement and dynamics in isostructural solvates of droperidol.

2015

(13)C, (15)N and (2)H solid-state NMR spectroscopy have been used to rationalize arrangement and dynamics of solvent molecules in a set of isostructural solvates of droperidol. The solvent molecules are determined to be dynamically disordered in the methanol and ethanol solvates, while they are ordered in the acetonitrile and nitromethane solvates. (2)H NMR spectra of deuterium-labelled samples allowed the characterization of the solvent molecule dynamics in the alcohol solvates and the non-stoichiometric hydrate. The likely motion of the alcohol molecules is rapid libration within a site, plus occasional exchange into an equivalent site related by the inversion symmetry, while the water mo…

Models MolecularNuclear and High Energy PhysicsMagnetic Resonance SpectroscopyMolecular ConformationSpin–lattice relaxationSolvent dynamicsMotional broadeningCrystallography X-RaySolid-state NMRchemistry.chemical_compoundComputational chemistryMoleculeDroperidolIsostructuralInstrumentationAb initio calculations.RadiationNitromethaneChemistryIsostructural solvatesGeneral ChemistryNuclear magnetic resonance spectroscopyHydrates/solvatesSolventNMR spectra databaseCrystallographySolid-state nuclear magnetic resonanceSolventsHydrate
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Random walks and random numbers from supercontinuum generation

2012

International audience; We report a numerical study showing how the random intensity and phase fluctuations across the bandwidth of a broadband optical supercontinuum can be interpreted in terms of the random processes of random walks and L´evy flights. We also describe how the intensity fluctuations can be applied to physical random number generation. We conclude that the optical supercontinuum provides a highly versatile means of studying and generating a wide class of random processes at optical wavelengths.

Models MolecularOptics and PhotonicsRandom number generationMolecular ConformationPhysics::Optics01 natural sciences010309 opticsOptics0103 physical sciencesBroadbandComputer Simulation010306 general physicsPhysics[PHYS.PHYS.PHYS-OPTICS]Physics [physics]/Physics [physics]/Optics [physics.optics]Models Statisticalbusiness.industryStochastic processPhysicsBandwidth (signal processing)Models TheoreticalRandom walkAtomic and Molecular Physics and OpticsSupercontinuumLévy flightLinear ModelsbusinessAlgorithmsPhotonic-crystal fiber
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