Search results for "molecular dynamics"
showing 10 items of 1075 documents
Many-body quantum dynamics by adiabatic path-integral molecular dynamics: Disordered Frenkel Kontorova models
2005
The spectral density of quantum mechanical Frenkel Kontorova chains moving in disordered, external potentials is investigated by means of path-integral molecular dynamics. If the second moment of the embedding potential is well defined (roughness exponent ), there is one regime in which the chain is pinned (large masses of chain particles) and one in which it is unpinned (small ). If the embedding potential can be classified as a random walk on large length scales ( ), then the chain is always pinned irrespective of the value of . For , two phonon-like branches appear in the spectra.
Structural relaxation in a binary metallic melt: Molecular dynamics computer simulation of undercooledAl80Ni20
2008
Molecular dynamics computer simulations are performed to study structure and structural relaxation in the glassforming metallic alloy ${\text{Al}}_{80}{\text{Ni}}_{20}$. The interactions between the particles are modeled by an effective potential of the embedded atom type. Our model of ${\text{Al}}_{80}{\text{Ni}}_{20}$ exhibits chemical short-range order (CSRO) that is reflected in a broad prepeak around a wave number of $1.8\text{ }{\text{\AA{}}}^{\ensuremath{-}1}$ in the partial static structure factor for the Ni-Ni correlations. The CSRO is due to the preference of Ni atoms to have Al rather than Ni atoms as nearest neighbors. By analyzing incoherent and coherent intermediate scattering…
Understanding the glass transition and the amorphous state of matter: can computer simulation solve the challenge?
1999
The glass transition of supercooled fluids is one of the big puzzles of condensed matter physics, because there occurs a dramatic slowing down (the viscosity η can increase from about η = 1 Poise at the melting transition to η 10 13 Poise at the glass transition temperature T g ), but one hardly sees any accompanying change in the static structure. Theoretical concepts are very controversial - e.g., the Gibbs-di Marzio theory attributes glassy freezing to an underlying entropy catastrophe (the entropy of the supercooled fluid would fall below the crystal entropy at the Kauzmann temperature T 0 T g . Computer simulations offer the advantage that atomistically detailed information on structur…
Mesoscopic Simulation Methods for Studying Flow and Transport in Electric Fields in Micro- and Nanochannels
2012
In the past decades, several mesoscale simulation techniques have emerged as tools to study hydrodynamic flow phenomena on scales in the range of nanoto micrometers. Examples are Dissipative Particle Dynamics (DPD), Multiparticle Collision Dynamics (MPCD), or Lattice Boltzmann (LB) methods. These methods allow one to access time and length scales which are not yet within reach of atomistic Molecular Dynamics (MD) simulations, often at relatively moderate computational expense. They can be coupled with particle-based (e.g., molecular dynamics) simulation methods for thermally fluctuating nanoscale objects, such as colloids or large molecules. This makes them particularly attractive for the a…
Some Things We Can Learn from Chemically Realistic Polymer Melt Simulations
2005
We present in this contribution results from Molecular Dynamics (MD) simulations of a chemically realistic model of 1,4-polybutadiene (PB). The work we will discuss exemplifies the physical questions one can address with these types of simulations. We will specifically compare the results of the computer simulations with nuclear magnetic resonance (NMR) experiments, neutron scattering experiments and dielectric data. These comparisons will show how important it is to understand the torsional dynamics of polymers in the melt to be able to explain the experimental findings. We will then introduce a freely rotating chain (FRC) model where all torsion potentials have been switched off and show …
A fast solver for nonlocal electrostatic theory in biomolecular science and engineering
2011
Biological molecules perform their functions surrounded by water and mobile ions, which strongly influence molecular structure and behavior. The electrostatic interactions between a molecule and solvent are particularly difficult to model theoretically, due to the forces' long range and the collective response of many thousands of solvent molecules. The dominant modeling approaches represent the two extremes of the trade-off between molecular realism and computational efficiency: all-atom molecular dynamics in explicit solvent, and macroscopic continuum theory (the Poisson or Poisson--Boltzmann equation). We present the first fast-solver implementation of an advanced nonlocal continuum theo…
Multiscale Computer Simulations in Physics, Chemistry, and Biology: The Example Of Silica
2002
We show to what extent molecular dynamics simulations (MD) can explore struc-tural and dynamic properties of atomic systems whereby the system under consideration is amorphous silica (SiO2). Two studies are presented: (i) a large scale simulation of the dynam-ics of a SiO2 melt and (ii) the investigation of free silica surfaces where a mixture of a classical MD and a Car-Parrinello molecular dynamics is used.
Computer simulation of models for the structural glass transition
2008
In order to test theoretical concepts on the glass transition, we investigate several models of glassy materials by means of Monte Carlo (MC) and Molecular Dynamics (MD) computer simulations. It is shown that also simplified models exhibit a glass transition which is in qualitative agreement with experiment and that thus such models are useful to study this phenomenon. However, the glass transition temperture as well as the structural properties of the frozen-in glassy phase depend strongly on the cooling history, and the extrapolation to the limit of infinitely slow cooling velocity is nontrivial, which makes the identification of the (possible) underlying equilibrium transition very diffi…
Molecular correlations in a supercooled liquid
1998
We present static and dynamic properties of molecular correlation functions S_{lmn,l'm'n'}(q,t) in a simulated supercooled liquid of water molecules, as a preliminary effort in the direction of solving the molecular mode coupling theory (MMCT) equations for supercooled molecular liquids. The temperature and time dependence of various molecular correlation functions, calculated from 250 ns long molecular dynamics simulations, show the characteristic patterns predicted by MMCT and shed light on the driving mechanism responsible for the slowing down of the molecular dynamics. We also discuss the symmetry properties of the molecular correlation functions which can be predicted on the basis of t…
Using molecular alignment to track ultrafast collisional relaxation
2014
Field-free molecular alignment has been used in order to track the collisional relaxation occurring in a molecular gas. CO${}_{2}$ molecules were initially irradiated by a short linearly polarized laser pulse resulting in the increase of their rotational energy. The evolution of the subsequent ultrafast relaxation process was optically probed after irradiating the sample with a second, weaker, short pulse leading to the alignment of the preheated molecules. Using classical molecular dynamic simulations, we were able to quantitatively reproduce the experimental shapes and amplitudes of the recorded revival transients for a time interval extending from 25 to 500 ps until thermalization of the…