Search results for "molecular dynamics"

Star polymers confined in a nanoslit: a simulation test of scaling and self-consistent field theories

2013

The free energy cost of confining a star polymer where f flexible polymer chains containing N monomeric units are tethered to a central unit in a slit with two parallel repulsive walls a distance D apart is considered, for good solvent conditions. Also the parallel and perpendicular components of the gyration radius of the star polymer, and the monomer density profile across the slit are obtained. Theoretical descriptions via Flory theory and scaling treatments are outlined, and compared to numerical self-consistent field calculations (applying the Scheutjens–Fleer lattice theory) and to Molecular Dynamics results for a bead-spring model. It is shown that Flory theory and self-consistent fi…

The escape transition of a compressed star polymer: Self-consistent field predictions tested by simulation

2013

The escape transition of a polymer "mushroom" (a flexible chain grafted to a flat non-adsorbing substrate surface in a good solvent) occurs when the polymer is compressed by a cylindrical piston of radius $R$, that by far exceeds the chain gyration radius. At this transition, the chain conformation abruptly changes from a two-dimensional self-avoiding walk of blobs (of diameter $H$, the height of the piston above the substrate) to a "flower conformation", i.e. stretched almost one-dimensional string of blobs (with end-to-end distance $\approx R$) and an "escaped" part of the chain, the "crown", outside the piston. The extension of this problem to the case of star polymers with $f$ arms is c…

Control of molecular dynamics with zero-area fields: Application to molecular orientation and photofragmentation

2014

The constraint of time-integrated zero-area on the laser field is a fundamental, both theoretical and experimental requirement in the control of molecular dynamics. By using techniques of local and optimal control theory, we show how to enforce this constraint on two benchmark control problems, namely molecular orientation and photofragmentation. The origin and the physical implications on the dynamics of this zero-area control field are discussed.

Field-free molecular orientation by THz laser pulses at high temperature

2012

We investigate to which extend a THz laser pulse can be used to produce field-free molecular orientation at high temperature. We consider laser pulses that can be implemented with the state of the art technology and we show that the efficiency of the control scheme crucially depends on the parameters of the molecule. We analyze the temperature effects on molecular dynamics and we demonstrate that, for some molecules, a noticeable orientation can be achieved at high temperature.

Time-dependent unitary perturbation theory for intense laser-driven molecular orientation

2004

We apply a time-dependent perturbation theory based on unitary transformations combined with averaging techniques, on molecular orientation dynamics by ultrashort pulses. We test the validity and the accuracy of this approach on LiCl described within a rigid-rotor model and find that it is more accurate than other approximations. Furthermore, it is shown that a noticeable orientation can be achieved for experimentally standard short laser pulses of zero time average. In this case, we determine the dynamically relevant parameters by using the perturbative propagator, that is derived from this scheme, and we investigate the temperature effects on the molecular orientation dynamics.

Dynamics of H2 molecule driven by an ultra-short laser field

2004

We describe, using a semiclassical approach, the molecular dynamics of a one-dimensional H2 molecule interacting with a laser, beyond the Born–Oppenheimer approximation. We observe and discuss different molecular behaviors, such as ionization and dissociation.

Liquid-liquid phase coexistence in gold clusters. 2D or not 2D?

2006

The thermodynamics of gold cluster anions (${\mathrm{Au}}_{N}^{\ensuremath{-}}$, $N=11,\dots{},14$) is investigated using quantum molecular dynamics. Our simulations suggest that ${\mathrm{Au}}_{N}^{\ensuremath{-}}$ may exhibit a novel, freestanding planar liquid phase which dynamically coexists with a normal three-dimensional liquid. Upon cooling with experimentally realizable cooling rates, the entropy-favored three-dimensional liquid clusters often supercool and solidify into the ``wrong'' dimensionality. This indicates that experimental validation of theoretically predicted ${\mathrm{Au}}_{N}^{\ensuremath{-}}$ ground states might be more complicated than hitherto expected.

Dynamical precursor of nematic order in a dense fluid of hard ellipsoids of revolution

2004

We investigate hard ellipsoids of revolution in a parameter regime where no long range nematic order is present but already finite size domains are formed which show orientational order. Domain formation leads to a substantial slowing down of a collective rotational mode which separates well from the usual microscopic frequency regime. A dynamic coupling of this particular mode into all other modes provides a general mechanism which explains an excess peak in spectra of molecular fluids. Using molecular dynamics simulation on up to 4096 particles and on solving the molecular mode coupling equation we investigate dynamic properties of the peak and prove its orientational origin.

The Dynamics of Supercooled Silica: Acoustic modes and Boson peak

1997

Using molecular dynamics computer simulations we investigate the dynamics of supercooled silica in the frequency range 0.5-20~THz and the wave-vector range 0.13-1.1\AA^{-1}. We find that for small wave-vectors the dispersion relations are in very good agreement with the ones found in experiments and that the frequency at which the boson-peak is observed shows a maximum at around 0.39\AA^{-1}.

Coherence and control of molecular dynamics in rare gas matrices

2007