Search results for "molecular phylogenetics"

An 18S rDNA-Based Molecular Phylogeny of Aphidiinae (Hymenoptera: Braconidae)

2000

We have obtained a molecular phylogeny of the subfamily Aphidiinae (Hymenoptera: Braconidae) by sequencing the 18S rDNA in 37 aphidiine taxa. Approximately 1857 nucleotides were sequenced in each species. Evolutionary relationships were established by comparing the results of maximum-parsimony, maximum-likelihood, and distance analyses. The most variable region of this gene, V4 (approx 403 nucleotides), was employed to establish the basality of the tribe Ephedrini within this subfamily. All phylogenetic reconstructions yielded trees with very similar topologies that confirmed the existence of two of the four traditionally accepted tribes, Ephedrini and Praini, but questioned the existence o…

Phylogeny of Sesuvioideae (Aizoaceae) – Biogeography, leaf anatomy and the evolution of C4 photosynthesis

2015

Abstract Sesuvioideae (Aizoaceae) form a small subfamily of drought-tolerant plants exhibiting leaf succulence, halophytic ecology, and the C4 photosynthetic pathway. Sesuvioideae are sister to the species-rich subfamilies Ruschioideae, Mesembryanthemoideae and Aizooideae that contain many CAM lineages. This close relationship of CAM and C4 taxa identifies the Sesuvioideae as an important clade to address hypotheses of photosynthetic pathway evolution. This study presents a molecular phylogeny of Sesuvioideae based on five markers (atpB-rbcL spacer, rps16 intron, trnL-trnF spacer, petB-petD spacer, ITS) and 51 accessions representing all genera and 37 species. We determined carbon isotope d…

Evolutionary history of treecreeper vocalisations (Aves: Certhia)☆

2008

AbstractSince the vocalisations of passerine birds are in general a good means to separate taxa when external morphological differences are few, song and call recordings of 33 treecreeper (Certhia) taxa were sonagraphed and their parameters analysed. The vocalisations show low intra-individual and intra-population variation. Phylogenetic evolutionary units at the population level were delimited by time, frequency and syntax parameters by means of principal-component and discriminant analyses. Traits of territorial song were traced on a phylogenetic tree based on cytochrome b sequences, and a mean acoustic character difference was calculated. All presently recognised nine species could be di…

Echinostomes: systematics and life cycles

2008

This chapter provides a review of the most significant literature in the last decade on the systematics and biology of echinostomes and echinostome-like digeneans. This review is primarily concerned with members of the genus Echinostoma, although members of other genera (Echinoparyphium, Echinochasmus, Himasthla, Hypoderaeum, Petasiger, Euparyphium, Stephanoprora, Isthmiophora, and Acanthoparyphium) and echinostome-related genera (Parorchis, Philophthalmus and Ribeiroia) are also considered. The literature on molecular systematics and morphometrics of these trematodes is reviewed. Specific mention is made of the life cycle patterns of echinostome and echinostome-like digeneans along with an…

Towards a complete phylogeny of African Melastomateae : systematics of Dissotis and allies (Melastomataceae)

2020

Molecular phylogeny of Atripliceae (Chenopodioideae, Chenopodiaceae): Implications for systematics, biogeography, flower and fruit evolution, and the…

2011

 Premise of the study : Atripliceae (Chenopodiaceae), including Atriplex (300 spp.) as the largest genus of the family, are an ecologically important group of steppes and semideserts worldwide. Relationships in Atripliceae are poorly understood due to obscure and potentially convergent morphological characters.  Methods : Using sequence variation of two chloroplast markers ( rbcL gene, atpB-rbcL spacer) and one nrDNA marker (ITS) analyzed with BEAST, we investigated the systematics and biogeography of Atripliceae. We surveyed fl ower morphology and fruit anatomy to study the evolution of fland fruits in the tribe.  Key results : Female fl owers with persistent foliar cover (the diagnosti…

Molecular Phylogenetic Analyses in Court Trials

2010

Molecular phylogenetics allows reconstructing of the genealogy and evolutionary history of organisms from information on their nucleotide or amino acid sequences. When sequences are derived from very fast evolving organisms, such as ribonucleic acid (RNA) viruses, changes accumulate in a few days or weeks, thus allowing the reconstruction of very recent evolutionary events in the history of these populations. One such event is the transmission of one of these viruses, for instance human immunodeficiency virus (HIV) or hepatitis C virus (HCV), from an infected person to another. This occasionally results in a legal demand seeking for compensation and/or punishment for the transmitter. Hence,…

The monophyly and evolution of Cynara L. (Asteraceae) sensu lato: evidence from the Internal Transcribed Spacer region of nrDNA

2005

The monophyly and evolution of Cynara was investigated using ITS sequence data. Parsimony analysis supports the monophyly of Cynara sensu lato, i.e. including the distinctive taxa C. humilis and C. tournefortii. This contradicts the recent decision to create a new monotypic genus Arcyna for C. tournefortii. A hypothesised close relationship between C. tournefortii and Silybum Adans. is also refuted. Four of the five species of Cynara, for which multiple accessions were sequenced, were shown to be monophyletic but C. baetica was found to be non-monophyletic. Free energy estimates for ITS1 secondary structure and conservation of the 5.8S region suggest that this is not due to the occurrence o…

Complete phylogeny and historical biogeography of true rosefinches (Aves:Carpodacus)

2013

True rosefinches (Aves: Carpodacus) are restricted to Eurasia, and 19 out of 25 species occur in the Sino-Himalayas, making this the likely centre of origin. To test this hypothesis, suggested species splits had to be evaluated and potential further cryptic diversity unravelled. A taxon-complete dated molecular phylogeny was reconstructed using maximum-likelihood and Bayesian methods. Maximum-parsimony and likelihood approaches were applied to deduce ancestral areas. Rosefinches, including the widespread Carpodacus erythrinus (Pallas, 1770), originated in south-west China (and the Himalayas) 14 Mya, and gave rise to a smaller clade consisting of C. erythrinus, Haematospiza sipahi (Hodgson, …

An analysis of inter- and intraspecific genetic variabilities in theKluyveromyces marxianusgroup of yeast species for the reconsideration of theK. la…

2002

In the present work, we analyse the sequences of the 5.8S rRNA gene and the two internal transcribed spacers 1 and 2 (5.8S-ITS region), obtained from 39 strains belonging to the species Kluyveromyces aestuarii, K. dobzhanskii, K. lactis and K. marxianus, K. nonfermentans and K. wickerhamii, to solve the phylogenetic relationships among these species and also to determine the possible genetic basis for the delimitation of the two currently accepted K. lactis varieties: lactis, including lactose-positive strains isolated from dairy products, and drosophilarum, comprising lactose-negative strains isolated from insects and plant exudates. The determination of the phylogenetic relationships with…