Search results for "molecule"

Hydration of agarose double helix: A monte carlo simulation

2009

The structure of the water around agarose double helix is analyzed with ab initio quantum mechanical calculations and Monte Carlo simulations. The potential surface is sampled by computing the interaction energy between fragments of agarose and a water molecule placed at 221 different orientations and/or positions. These energy values are fitted to a simple analytical expression representing atom-atom pair potentials for a water molecule interacting with agarose. A preliminary understanding of the agarose-water interaction is obtained from isoenergy contour maps at planar cross sections, perpendicular to the long axis of the double helix, and for cylindrical surfaces enclosing the double he…

Alternating Ferro- and Antiferromagnetic Interactions in a Chainlike CuII Coordination Polymer

1993

Interplay between spin crossover and proton migration along short strong hydrogen bonds

2021

The iron(ii) salt [Fe(bpp)2](isonicNO)2·HisonicNO·5H2O (1) (bpp = 2,6-bis(pyrazol-3-yl)pyridine; isonicNO = isonicotinate N-oxide anion) undergoes a partial spin crossover (SCO) with symmetry breaking at T1 = 167 K to a mixed-spin phase (50% high-spin (HS), 50% low-spin (LS)) that is metastable below T2 = 116 K. Annealing the compound at lower temperatures results in a 100% LS phase that differs from the initial HS phase in the formation of a hydrogen bond (HB) between two water molecules (O4W and O5W) of crystallisation. Neutron crystallography experiments have also evidenced a proton displacement inside a short strong hydrogen bond (SSHB) between two isonicNO anions. Both phenomena can al…

Magnetic exchange interaction in clusters of orbitally degenerate ions. I. Effective Hamiltonian

2001

Abstract A new effective Hamiltonian is reported for the kinetic exchange between two arbitrary terms 2S A +1 Λ A and 2S B +1 Λ B that can be ground or excited in octahedrally coordinated transition metal ions. This Hamiltonian is applicable to both homo- and heterometallic clusters. For the homonuclear cluster the resonance part of the effective Hamiltonian is also presented for the case when one of the ions is excited. The operator part of the exchange Hamiltonian contains symmetry adapted products of the cubic irreducible tensors acting in orbital spaces ΛA and ΛB and scalar product of site spin operators. The parameters of the Hamiltonian are defined by the relevant intercenter transfer…

Theoretical study on hydration of symmetrically different diazanaphthalenes

2005

Abstract Quinazoline (symmetrical) and quinoxaline (unsymmetrical), diazanaphthalenes involved in certain biological reactions, have been studied computational with the purpose of comparing their protonation and covalent hydration mechanisms. Geometry optimizations of neutral, mono and diprotonated cations and hydrated products have been carried out at three levels of theory. Geometry optimizations were performed at HF, DFT/B3LYP levels of theory using 6-311G* basis set and single point energies were calculated at the MP2 level of theory using the same basis set. In agreement with experimental results, calculations predict a two steps mechanism resulting in a hydrated cation in which the OH…

Studies on supramolecular gel formation using DOSY NMR

2015

Herein, we present the results obtained from our studies on supramolecular self-assembly and molecular mobility of low-molecular-weight gelators (LMWGs) in organic solvents using pulsed field gradient (PFG) diffusion ordered spectroscopy (DOSY) NMR. A series of concentration-dependent DOSY NMR experiments were performed on selected LMWGs to determine the critical gelation concentration (CGC) as well as to understand the behaviour of the gelator molecules in the gel state. In addition, variable-temperature DOSY NMR experiments were performed to determine the gel-to-sol transition. The PFG NMR experiments performed as a function of gradient strength were further analyzed using monoexponential…

Molecule Isomerism Modulates the Diradical Properties of Stable Singlet Diradicaloids

2019

Inclusion of quinoidal cores in conjugated hydrocarbons is a common strategy to modulate the properties of diradicaloids formed by aromaticity recovery within the quinoidal unit. Here we describe an alternative approach of tuning of diradical properties in indenoindenodibenzothiophenes upon anti → syn isomerism of the benzothiophene motif. This alters the relationship of the S atom with the radical center from linear to cross conjugation yet retains the same 2,6-naphtho conjugation pattern of the rearomatized core. We conduct a full comparison between the anti and syn derivatives based on structural, spectroscopic, theoretical, and magnetic measurements, showing that these systems are stabl…

Electron Energy Loss and DFT/SCI Study of the Singlet and Triplet Excited States of Aminobenzonitriles and Benzoquinuclidines:  Role of the Amino Gro…

1999

Spectroscopic consequences of varying the twist angle of the amino group in aminobenzonitrile systems in the electronic ground state are investigated by applying electron energy loss (EEL) spectroscopy and density functional theory to 4-N,N-dimethylaminobenzonitrile (DMABN), 4-N,N-dimethylamino-3,5-dimethylbenzonitrile (MMD), benzoquinuclidine (BQ), and 6-cyanobenzoquinuclidine (CBQ). A number of singlet and triplet excited states was observed and assigned with the help of DFT/SCI theory. The results characterize the gas-phase spectroscopy of the molecules and verify to within 0.3 eV the predictive power of DFT/SCI theory for vertical states over a wide range of twist and pyramidalization a…

Transfer of Water and Active Molecules at the Interfaces in Complex Food Systems: Theoretical and Practical Aspects

2011

Abstract During processing, storage and consumption, mass transfer of various molecules (water, gases, flavour compounds or other solutes) occur between the different phases in complex food products, and/or also between the complex food and its surroundings. These mass transfers can lead to physical and/or chemical changes and thus induce food quality modifications. The objective of this presentation is to better understand the behaviour of small molecules at the interfaces, especially in model heterogeneous food systems. Different techniques have been developed to characterize their properties and their impact on the mass transfers. Particularly, techniques such as rotative diffusion cell …

Biorelevant fluorine-containing N-heterocycles

2019

Abstract Over the course of many decades, life sciences have gained an insight into the structure–activity relationship of biologically active molecules, thereby allowing for a deeper understanding of how such molecules can be modified to produce the desired effect within a living organism. The introduction of either a nitrogen-containing heterocycle or a fluorine-containing unit are commonly used strategies in the pharmaceutical and agrochemical industries to fine-tune the activity, toxicity, and metabolic stability, among other properties, of their respective products. Herein, an overview of the latest fluorine containing N-heterocyclic molecules of significant biological importance, eith…