Search results for "morphometric"

Quantitative trait loci affecting the 3D skull shape and size in mouse and prioritization of candidate genes in-silico.

2015

13 pages; International audience; We describe the first application of high-resolution 3D micro-computed tomography, together with 3D landmarks and geometric morphometrics, to map QTL responsible for variation in skull shape and size using a backcross between C57BL/6J and A/J inbred strains. Using 433 animals, 53 3D landmarks, and 882 SNPs from autosomes, we identified seven QTL responsible for the skull size (SCS.qtl) and 30 QTL responsible for the skull shape (SSH.qtl). Size, sex, and direction-of-cross were all significant factors and included in the analysis as covariates. All autosomes harbored at least one SSH.qtl, sometimes up to three. Effect sizes of SSH.qtl appeared to be small, r…

Dog sperm head morphometry: its diversity and evolution

2017

Dogs have been under strong artificial selection as a consequence of their relationship with man. Differences between breeds are evident that could be reflected in seminal characteristics. The present study was to evaluate differences in sperm head morphometry between seven well-defined breeds of dog: the British Bulldog, Chihuahua, German Shepherd, Labrador Retriever, Spanish Mastiff, Staffordshire Terrier, and Valencian Rat Hunting dog. Semen samples were obtained by masturbation and smears stained with Diff-Quik. Morphometric analysis (CASA-Morph) produced four size and four shape parameters. Length, Ellipticity, and Elongation showed higher differences between breeds. MANOVA revealed di…

MORPHOMETRIC ANALYSIS OF HUMAN CORNEAL ENDOTHELIUM BY MEANS OF SPATIAL POINT PATTERNS

2002

This paper presents a method for detecting abnormalities in spatial arrangements of cells within any tissue that can be described by different sets of relevant points. The method has been applied to the detection of subtle abnormalities in corneal endothelia. Images of this type of tissue can be characterized by two types of points: cell centroids and triple points associated with the apical intersections as it was proposed by Díaz.7 Both types of points jointly considered are modeled using a bivariate spatial point process; then a statistical analysis based on certain distributional descriptors proposed by Doguwa4,9 is carried out to discriminate severe and subtle abnormalities from contr…

Environmental and ontogenetic constraints on developmental stability in the spatangoid sea urchin Echinocardium (Echinoidea).

2006

13 pages; International audience; Spatangoid irregular sea urchins are detritivorous benthic organisms particularly prone to variations of environment, and their mode of growth and plate morphology make them an appropriate model to assess the effects of environmental variations. Two populations of Echinocardium flavescens were sampled in two sites of the Norwegian coast characterized by contrasted environmental conditions. Different morphological descriptors (plate areas, interlandmarks distances, overall size, and shape of the posterior ambulacra) were used to appraise interindividual variations, and fluctuating asymmetry. The comparisons were carried out using classical fluctuating asymme…

Are calanco landforms similar to river basins?

2017

In the past badlands have been often considered as ideal field laboratories for studying landscape evolution because of their geometrical similarity to larger fluvial systems. For a given hydrological process, no scientific proof exists that badlands can be considered a model of river basin prototypes. In this paper the measurements carried out on 45 Sicilian calanchi, a type of badlands that appears as a small-scale hydrographic unit, are used to establish their morphological similarity with river systems whose data are available in the literature. At first the geomorphological similarity is studied by identifying the dimensionless groups, which can assume the same value or a scaled one in…

Regionalization of epididymal duct and epithelium in rats and mice by automatic computer-aided morphometric analysis.

2005

Aim: To establish a rat and mouse epididymal map based on the use of the Epiquatre automatic software for histologic image analysis. Methods: Epididymides from five adult rats and five adult mice were fixed in alcoholic Bouin’s fixative and embedded in paraffin. Serial longitudinal sections through the medial aspect of the organ were cut at 10 µm and stained with hematoxylin and eosin. As determined from major connective tissue septa, nine subdivisions of the rat epididymis and seven for the mouse were determined, consisting of five sub-regions in the caput (rat and mouse), one (mouse) or three (rat) in the corpus and one in the cauda (rat and mouse). Using the Epiquatre software, several t…

Further evidence of length- and sex-dependent variation of some morphological characters in Bathyporeia guilliamsoniana (Bate, 1857) (Crustacea: Amph…

2011

Explorative 3D geometric morphometrics on crania and mandibles of Cercopithecini (1024 specimens)

2015

A dataset of crania and mandibles from Old World primates was investigated through the use of 3D Geometric Morphometrics. We focused the attention on the tribe Cercopithecini, sampling 1024 specimens preserved in 9 different museums and related to a total of 31 species. Other 102 specimens belonging to 10 species of the same family Cercopithecidae were added as outgroup. Our sampling campaign was carried on with a 3D-digitizer Microscribe G2X and the data were processed through the softwares Morphologika and MorphoJ. We conducted both PCA and CVA analyses to investigate the power of resolution of the morphometric method and to understand the role of a-priori groups in the discrimination of …

Differentiation of Trichuris species eggs from non-human primates by geometric morphometric analysis

2020

Human trichuriasis is a neglected tropical disease which affects millions of people worldwide, mostly living in low socio-economic conditions. Numerous studies have been conducted over the past 10 years to compare the different techniques for T. trichiura eggs detection. Our study provides the first geometric morphometric analysis for the specific detection of eggs of Trichuris sp. isolated from stools of macaque (M. sylvanus), colobus (C. g. kikuyensis), grivets (C. aethiops) and the Brazza's monkey (C. neglectus) from zoos in Spain. Principal Component Analysis (PCA) arises as an efficient method to determine Trichuris spp. eggs. The selected measurements to be included in the PCA were pr…

Ecomorphological inferences in early vertebrates: reconstructing

2017

Our knowledge about the body morphology of many extinct early vertebrates is very limited, especially in regard to their post-thoracic region. The prompt disarticulation of the dermo-skeletal elements due to taphonomic processes and the lack of a well-ossified endoskeleton in a large number of groups hinder the preservation of complete specimens. Previous reconstructions of most early vertebrates known from partial remains have been wholly based on phylogenetically closely related taxa. However, body design of fishes is determined, to a large extent, by their swimming mode and feeding niche, making it possible to recognise different morphological traits that have evolved several times in no…