Search results for "nomi"
showing 10 items of 31033 documents
Plant functional and taxonomic diversity in European grasslands along climatic gradients
2021
Aim European grassland communities are highly diverse, but patterns and drivers of their continental-scale diversity remain elusive. This study analyses taxonomic and functional richness in European grasslands along continental-scale temperature and precipitation gradients. Location Europe. Methods We quantified functional and taxonomic richness of 55,748 vegetation plots. Six plant traits, related to resource acquisition and conservation, were analysed to describe plant community functional composition. Using a null-model approach we derived functional richness effect sizes that indicate higher or lower diversity than expected given the taxonomic richness. We assessed the variation in abso…
A haplotype-resolved, de novo genome assembly for the wood tiger moth (Arctia plantaginis) through trio binning
2020
ABSTRACT Background Diploid genome assembly is typically impeded by heterozygosity because it introduces errors when haplotypes are collapsed into a consensus sequence. Trio binning offers an innovative solution that exploits heterozygosity for assembly. Short, parental reads are used to assign parental origin to long reads from their F1 offspring before assembly, enabling complete haplotype resolution. Trio binning could therefore provide an effective strategy for assembling highly heterozygous genomes, which are traditionally problematic, such as insect genomes. This includes the wood tiger moth (Arctia plantaginis), which is an evolutionary study system for warning colour polymorphism. F…
Are there so many congeneric species of chironomid larvae in a small stream?
2018
The co-occurrence of larvae of congeneric chironomid species is common in natural stream assemblages, and raises the problem of finding mechanisms to explain the co-existence of species with similar ecological requirements. In this contribution, we explored the co-occurrence of chironomid larvae belonging to congeneric species within four genera of chironomids: Cricotopus, Eukiefferiella, Orthocladius and Rheocricotopus (with 2, 7, 2 and 4 species, respectively) in the headwaters of a small Mediterranean calcareous stream. Due to the intrinsic, natural spatial and temporal variability in these habitats, we studied three different sites at two different seasons within the annual hydrological…
Update in unified terroir zoning methodologies
2018
International audience; The concept of terroir is based on the assumption that the quality and the typicity of an agricultural product are linked to its origin. The precise definition of an origin requires zoning. Because terroir expression in viticulture is largely driven by interactions between the vine and its natural environment, soil and climate play a key role in terroir zoning. For clarity, soil-based and climate-based zoning are presented separately in this paper. They are, however, ideally carried out simultaneously, because of the existence of multiple interactions between these terroir factors. Prior to the implementation of zoning, the objectives need to be carefully defined. Th…
Predation on Multiple Trophic Levels Shapes the Evolution of Pathogen Virulence
2009
The pathogen virulence is traditionally thought to co-evolve as a result of reciprocal selection with its host organism. In natural communities, pathogens and hosts are typically embedded within a web of interactions with other species, which could affect indirectly the pathogen virulence and host immunity through trade-offs. Here we show that selection by predation can affect both pathogen virulence and host immune defence. Exposing opportunistic bacterial pathogen Serratia marcescens to predation by protozoan Tetrahymena thermophila decreased its virulence when measured as host moth Parasemia plantaginis survival. This was probably because the bacterial anti-predatory traits were traded o…
Key Economic Characteristics of Italian Trawl Fisheries and Management Challenges
2017
Two key measures of economic performance are calculated and analyzed for three important Italian trawl fisheries (Northern Thyrrenian Sea, South of Sicily, Northern Adriatic Sea): the Net Economic Returns (NER), which informs on the economic performance and is considered a proxy of resource rent in fisheries and the Return on Fixed Tangible Assets (ROFTA), which is used as an approximation of the Return on Investment (ROI) and is a key financial and performance indicator for a fisherman in order to take a decision to operate in a fishery. The trend of these indicators over the last decade highlights a poor economic performance that is associated with an overall poor condition of the state o…
Distribution of Caulerpa taxifolia var. distichophylla (Sonder) Verlaque, Huisman & Procaccini in the Mediterranean Sea
2019
The Non-Indigenous Species (NIS) Caulerpa taxifolia var. distichophylla (Sonder) Verlaque, Huisman & Procaccini has been reported for the first time in the Mediterranean Sea along the coast of South Turkey. This NIS is actively expanding into the Eastern and Western Mediterranean Sea. In this paper, we present an overview of the current distribution of this alga in the Mediterranean Sea, based on relevant scientific publications, grey literature and personal observations. New records from the Sicilian coast (Italy) are also reported. Caulerpa taxifolia var. distichophylla was found over a wide range of environmental conditions (depth, light and substratum), suggesting a broad ecolog…
Predicting the invasion of the acoustic niche: Potential distribution and call transmission efficiency of a newly introduced frog in Cuba
2021
8 pages; International audience; Leptodactylus fragilis is a recently introduced frog in Cuba, where it may impact local populations of amphibians in different ways. Here, we combined two methods to predict the invasion of the acoustic niche of Cuban amphibians by L. fragilis. We first use species distribution models to predict the spread and establishment of L. fragilis in Cuba. We then performed sound propagation experiments to evaluate the potential invasion of the acoustic niche in predicted suitable areas for the presence of L. fragilis. This species could have a successful establishment, spreading mainly in open areas, where its advertisement calls propagate efficiently, with low atte…
OMICfpp: a fuzzy approach for paired RNA-Seq counts
2019
© The Author(s) 2019.
Novel subpopulations in date palm (Phoenix dactylifera) identified by population-wide organellar genome sequencing
2019
Background The date palm is one of the oldest cultivated fruit trees. The tree can withstand high temperatures and low water and the fruit can be stored dry offering nutrition across the year. The first region of cultivation is believed to be near modern day Iraq, however, where and if the date palm was domesticated is still a topic of debate. Recent studies of chloroplast and genomic DNA revealed two major subpopulations of cultivars centered in both the Eastern range of date palm cultivation including Arabian Peninsula, Iraq and parts of South Asia, and the Western range, including North Africa. Results To better understand the origins of date palm cultivation we sequenced and analyzed ov…