Search results for "oligo"

Quantification of GABA(A) receptor subunit mRNAs by non-radioisotopic competitive RT-PCR utilizing plate-based EIA methodology.

2000

We developed a non-radioisotopic quantitative competitive RT-PCR method for the measurement of gamma-aminobutyric acid (GABA) type A receptor subunit mRNA levels. The specificity of the method was optimized by the use of four subunit-specific oligonucleotides in the sequential steps: reverse transcription, polymerase chain reaction (PCR), and detection. The biotinylated PCR products were bound on streptavidin-coated microtiter plates allowing detection of the products using dinitrophenyl (DNP)-labeled probes and anti-DNP alkaline phosphatase conjugate. The method was set up for the six major cerebellar GABA(A) receptor subunits: alpha1; alpha6; beta2; beta3; gamma2 and delta. The method is …

Generation of a DNA microarray for determination of E6 natural variants of human papillomavirus type 16.

2003

Infection with high-risk types of human papillomavirus (HPV) is necessary for the development of cervical cancer. However, the majority of the HPV infections are efficiently cleared by the immune system and only a minority persist and induce the development of malignant lesions. Several studies provided evidence that intratype genetic variations are implicated in determining the clinical outcome of HPV infections. In this study, we describe a DNA chip based on arrayed primer extension (APEX) for the analysis of the natural variants of HPV16, the most frequently detected type in cervical cancer world-wide. We show that HPV16 E6 variants are detected efficiently by APEX. In addition, APEX is …

1979

The demixing behavior of 20 representatives of the system oligo(dimethylsiloxane)/oligo(propylene glycol) (ODMS/OPG)1 is investigated at pressures up to 1 500 bar. The degrees of oligomerization range from 2 to 5 for the first and from 1 to 57, 6 for the second component. The experimental results are compared with those for the previously studied system oligoisobutene/oligo(propylene glycol) (OIB/OPG). In both cases the observed upper critical temperatures Tc increase with the number of monomeric units of the less polar component, whereas they run through a minimum when the number of monomeric units of the glycol is raised. For the present system the Tc values are found to be considerably h…

Isolation of oligopeptides from the water-soluble extract of goat cheese and their identification by mass spectrometry

2001

A procedure for the separation and identification of small peptides from the water-soluble fraction of a goat cheese was developed. The water-soluble extract was ultrafiltered (1000 Da membrane cutoff), and peptides were isolated by sequential chromatography: size exclusion chromatography (HPLC-grade water), anion exchange chromatography (phosphate buffer gradient), and semipreparative reverse-phase high-performance liquid chromatography (water/acetonitrile gradient). The fractions obtained were analyzed by combined mass spectrometry methods including electrospray ionization, liquid secondary ionization, and tandem mass spectrometry to identify and to confirm the sequences of 28 tri- to oct…

Mineral Profile

2013

The identification of foods with protected designation of origin (PDO) has been a long-standing issue. Its detection provides valuable information to regulatory commissions (government and industries) which can regulate precise quality control procedures for their products. Authentication of food covers many different aspects, including characterization, mislabelling and misinformation regarding origin, and adulteration, which is defined as the process to reduce the quality or nature of a given substance by adding a foreign or an inferior substance and removing a vital element. Numerous methods have been developed as fingerprinting methodologies for PDO products. The analytical techniques c…

Structure optimization of azobenzene oligomers for holography

2005

Azobenzene oligomer layers with side chain chromofore groups (ChG) has been experimentally studied to optimize scalar and vector hologram recording at 633 nm. ChG with different acceptors (Br, NO2, H, CN) and different bonding type to the matrix (dispersed without bonding or with covalent bonding) were used. The influence of oligomer matrix (polyvinylbuthirol, tolyle, hexamethylene, polyvinylpirolidone, double matrix) and spacers was also studied. The best results (the maximal diffraction efficiency of 7.9% and the minimal specific recording energy of 0.38 J/(cm2 %)) are obtained for ChG with one NO2 acceptor group covalently bonded to tolyle matrix. Double matrix considerably decreases the…

Myelin Proteome Analysis: Methods and Implications for the Myelin Cytoskeleton

2012

Myelin, the multilayered membrane that enwraps and insulates neuronal axons for fast signal propagation, is a plasma membrane specialization of oligodendrocytes and Schwann cells in the central and peripheral nervous system, respectively. Here we provide our lab protocols for the puri fi cation of myelin from mouse brains and for gel-based and gel-free proteomic applications, as well as a brief discussion with respect to our current knowledge of the myelin cytoskeleton.

Cascades of transcriptional induction during dendritic cell maturation revealed by genome-wide expression analysis.

2003

Dendritic cells (DC) are central regulators of immunity. Signal-induced maturation of DCs is assumed to be the starting point for specific immune responses. To further understand this process, we analyzed the alteration of transcript profiles along the time course of CD40 ligand-induced maturation of human myeloid DCs by Affymetrix GeneChip microarrays covering >6800 genes. Besides rediscovery of genes already described as associated with DC maturation proving reliability of the methods used, we identified clusterin as novel maturation marker. Looking across the time course, we observed synchronized kinetics of distinct functional groups of molecules whose temporal coregulation underscores …

Binding of Tat Protein to TAR Region of Human Immunodeficiency Virus Type 1 Blocks TAR-Mediated Activation of (2′-5′)Oligoadenylate Synthetase

1990

The TAR sequence of the 5' leader of HIV-1 long terminal repeat-directed mRNA was found to be able to bind to and to activate double-stranded RNA-dependent (2'-5')A synthetase. Binding of TAR to the purified synthetase in vitro was abolished by addition of HIV-1 Tat protein, which binds to this sequence with a high affinity. Inhibition of TAR-mediated activation of (2'-5')A synthetase by Tat was prevented in the presence of the Zn2+ and Cd2+ chelators o-phenanthroline and penicillamine, which did not impair TAR-synthetase interaction. Transient expression assays of bacterial chloramphenicol acetyltransferase (CAT) gene in HeLa cells revealed that the levels of both CAT mRNA and CAT protein …

Calcium signatures and signaling in cytosol and organelles of tobacco cells induced by plant defense elicitors

2011

Calcium signatures induced by two elicitors of plant defense reactions, namely cryptogein and oligogalacturonides, were monitored at the subcellular level, using apoaequorin-transformed Nicotiana tabacum var Xanthi cells, in which the apoaequorin calcium sensor was targeted either to cytosol, mitochondria or chloroplasts. Our study showed that both elicitors induced specific Ca2+ signatures in each compartment, with the most striking difference relying on duration. Common properties also emerged from the analysis of Ca2+ signatures: both elicitors induced a biphasic cytosolic [Ca2+] elevation together with a single mitochondrial [Ca2+] elevation concomitant with the first cytosolic [Ca2+] p…